I split the log in to two parts to single out the error (second part)
Reason for reboots was upgrade of system and a working out a couple of problems. Probably should have temporarily disabled fah from restarting while troubleshooting.
The Log:
Code: Select all
[03:57:21] + Attempting to get work packet
[03:57:21] Passkey found
[03:57:21] - Will indicate memory of 3832 MB
[03:57:21] - Connecting to assignment server
[03:57:21] Connecting to http://assign.stanford.edu:8080/
[03:57:24] Posted data.
[03:57:24] Initial: 40AB; - Successful: assigned to (171.64.65.56).
[03:57:24] + News From Folding@Home: Welcome to Folding@Home
[03:57:24] Loaded queue successfully.
[03:57:24] Connecting to http://171.64.65.56:8080/
[03:57:26] Posted data.
[03:57:26] Initial: 0000; - Receiving payload (expected size: 764009)
[03:57:40] - Downloaded at ~53 kB/s
[03:57:40] - Averaged speed for that direction ~50 kB/s
[03:57:40] + Received work.
[03:57:40] + Closed connections
[03:57:40]
[03:57:40] + Processing work unit
[03:57:40] Core required: FahCore_a3.exe
[03:57:41] Core found.
[03:57:41] Working on queue slot 01 [November 17 03:57:41 UTC]
[03:57:41] + Working ...
[03:57:41] - Calling './FahCore_a3.exe -dir work/ -nice 19 -suffix 01 -np 2 -checkpoint 15 -verbose -lifeline 1547 -version 629'
[03:57:41]
[03:57:41] *------------------------------*
[03:57:41] Folding@Home Gromacs SMP Core
[03:57:41] Version 2.22 (June 10, 2010)
[03:57:41]
[03:57:41] Preparing to commence simulation
[03:57:41] - Looking at optimizations...
[03:57:41] - Created dyn
[03:57:41] - Files status OK
[03:57:41] - Expanded 763497 -> 1404481 (decompressed 183.9 percent)
[03:57:41] Called DecompressByteArray: compressed_data_size=763497 data_size=1404481, decompressed_data_size=1404481 diff=0
[03:57:41] - Digital signature verified
[03:57:41]
[03:57:41] Project: 6702 (Run 4, Clone 58, Gen 71)
[03:57:41]
[03:57:41] Assembly optimizations on if available.
[03:57:41] Entering M.D.
Starting 2 threads
NNODES=2, MYRANK=0, HOSTNAME=thread #0
NNODES=2, MYRANK=1, HOSTNAME=thread #1
Reading file work/wudata_01.tpr, VERSION 4.0.99_development_20090605 (single precision)
Making 1D domain decomposition 2 x 1 x 1
starting mdrun 'VSD in POPC and water, neutralized'
144000000 steps, 720000.0 ps (continuing from step 142000000, 710000.0 ps).
[03:57:48] Completed 0 out of 2000000 steps (0%)
[04:09:02] ***** Got a SIGTERM signal (15)
[04:09:02] Killing all core threads
Folding@Home Client Shutdown.
Received the TERM signal, stopping at the next NS step
Received the second INT/TERM signal, stopping at the next step
Average load imbalance: 7.1 %
Part of the total run time spent waiting due to load imbalance: 4.3 %
Parallel run - timing based on wallclock.
NODE (s) Real (s) (%)
Time: 675.303 675.303 100.0
11:15
(Mnbf/s) (GFlops) (ns/day) (hour/ns)
Performance: 66.232 3.706 3.245 7.395
Thanx for Using GROMACS - Have a Nice Day
Note: Please read the license agreement (fah6 -license). Further
use of this software requires that you have read and accepted this agreement.
2 cores detected
--- Opening Log file [November 17 04:16:47 UTC]
# Linux SMP Console Edition ###################################################
###############################################################################
Folding@Home Client Version 6.29
http://folding.stanford.edu
###############################################################################
###############################################################################
Launch directory: /home/folding/fah
Executable: ./fah6
Arguments: -verbosity 9 -smp
[04:16:47] - Ask before connecting: No
[04:16:47] - User name: chrisretusn (Team 2291)
[04:16:47] - User ID: X
[04:16:47] - Machine ID: 1
[04:16:47]
[04:16:47] Loaded queue successfully.
[November
[04:16:47] - Autosending finished units... [November 17 04:16:47 UTC]
[04:16:47] + Processing work unit
[04:16:47] Trying to send all finished work units
[04:16:47] Core required: FahCore_a3.exe
[04:16:47] Project: 6702 (Run 13, Clone 33, Gen 43)
[04:16:47] Core found.
[04:16:47] + Attempting to send results [November 17 04:16:47 UTC]
[04:16:47] - Reading file work/wuresults_00.dat from core
[04:16:48] Working on queue slot 01 [November 17 04:16:48 UTC]
[04:16:48] + Working ...
[04:16:48] - Calling './FahCore_a3.exe -dir work/ -nice 19 -suffix 01 -np 2 -checkpoint 15 -verbose -lifeline 1550 -version 629'
[04:16:48] (Read 43678907 bytes from disk)
[04:16:48] Connecting to http://171.64.65.56:8080/
[04:16:48]
[04:16:48] *------------------------------*
[04:16:48] Folding@Home Gromacs SMP Core
[04:16:48] Version 2.22 (June 10, 2010)
[04:16:48]
[04:16:48] Preparing to commence simulation
[04:16:48] - Looking at optimizations...
[04:16:49] - Files status OK
[04:16:49] - Expanded 763497 -> 1404481 (decompressed 183.9 percent)
[04:16:49] Called DecompressByteArray: compressed_data_size=763497 data_size=1404481, decompressed_data_size=1404481 diff=0
[04:16:49] - Digital signature verified
[04:16:49]
[04:16:49] Project: 6702 (Run 4, Clone 58, Gen 71)
[04:16:49]
[04:16:49] Assembly optimizations on if available.
[04:16:49] Entering M.D.
[04:16:55] Using Gromacs checkpoints
Starting 2 threads
NNODES=2, MYRANK=0, HOSTNAME=thread #0
NNODES=2, MYRANK=1, HOSTNAME=thread #1
Reading file work/wudata_01.tpr, VERSION 4.0.99_development_20090605 (single precision)
Reading checkpoint file work/wudata_01.cpt generated: Wed Nov 17 12:09:02 2010
Making 1D domain decomposition 2 x 1 x 1
starting mdrun 'VSD in POPC and water, neutralized'
144000000 steps, 720000.0 ps (continuing from step 142005072, 710025.4 ps).
[04:16:56] Resuming from checkpoint
[04:16:56] Verified work/wudata_01.log
[04:16:56] Verified work/wudata_01.trr
[04:16:56] Verified work/wudata_01.xtc
[04:16:56] Verified work/wudata_01.edr
[04:16:56] Completed 5072 out of 2000000 steps (0%)
[04:43:40] ***** Got a SIGTERM signal (15)
[04:43:40] Killing all core threads
Folding@Home Client Shutdown.
Received the second INT/TERM signal, stopping at the next step
Average load imbalance: 8.0 %
Part of the total run time spent waiting due to load imbalance: 4.8 %
Parallel run - timing based on wallclock.
NODE (s) Real (s) (%)
Time: 1605.270 1605.270 100.0
26:45
(Mnbf/s) (GFlops) (ns/day) (hour/ns)
Performance: 64.260 3.596 3.149 7.622
Thanx for Using GROMACS - Have a Nice Day
Note: Please read the license agreement (fah6 -license). Further
use of this software requires that you have read and accepted this agreement.
2 cores detected
--- Opening Log file [November 17 04:45:19 UTC]
# Linux SMP Console Edition ###################################################
###############################################################################
Folding@Home Client Version 6.29
http://folding.stanford.edu
###############################################################################
###############################################################################
Launch directory: /home/folding/fah
Executable: ./fah6
Arguments: -verbosity 9 -smp
[04:45:19] - Ask before connecting: No
[04:45:19] - User name: chrisretusn (Team 2291)
[04:45:19] - User ID: X
[04:45:19] - Machine ID: 1
[04:45:19]
[04:45:19] Loaded queue successfully.
[04:45:19]
[04:45:19] - Autosending finished units... [November 17 04:45:19 UTC]
[04:45:19] + Processing work unit
[04:45:19] Trying to send all finished work units
[04:45:19] Core required: FahCore_a3.exe
[04:45:19] Project: 6702 (Run 13, Clone 33, Gen 43)
[04:45:19] Core found.
[04:45:19] + Attempting to send results [November 17 04:45:19 UTC]
[04:45:19] - Reading file work/wuresults_00.dat from core
[04:45:20] Working on queue slot 01 [November 17 04:45:20 UTC]
[04:45:20] + Working ...
[04:45:20] - Calling './FahCore_a3.exe -dir work/ -nice 19 -suffix 01 -np 2 -checkpoint 15 -verbose -lifeline 1560 -version 629'
[04:45:20] (Read 43678907 bytes from disk)
[04:45:20] Connecting to http://171.64.65.56:8080/
[04:45:20]
[04:45:20] *------------------------------*
[04:45:20] Folding@Home Gromacs SMP Core
[04:45:20] Version 2.22 (June 10, 2010)
[04:45:21]
[04:45:21] Preparing to commence simulation
[04:45:21] - Looking at optimizations...
[04:45:21] - Files status OK
[04:45:21] - Expanded 763497 -> 1404481 (decompressed 183.9 percent)
[04:45:21] Called DecompressByteArray: compressed_data_size=763497 data_size=1404481, decompressed_data_size=1404481 diff=0
[04:45:21] - Digital signature verified
[04:45:21]
[04:45:21] Project: 6702 (Run 4, Clone 58, Gen 71)
[04:45:21]
[04:45:21] Assembly optimizations on if available.
[04:45:21] Entering M.D.
[04:45:27] Using Gromacs checkpoints
Starting 2 threads
NNODES=2, MYRANK=0, HOSTNAME=thread #0
NNODES=2, MYRANK=1, HOSTNAME=thread #1
Reading file work/wudata_01.tpr, VERSION 4.0.99_development_20090605 (single precision)
Reading checkpoint file work/wudata_01.cpt generated: Wed Nov 17 12:43:40 2010
Making 1D domain decomposition 2 x 1 x 1
starting mdrun 'VSD in POPC and water, neutralized'
144000000 steps, 720000.0 ps (continuing from step 142016772, 710083.9 ps).
[04:45:28] Resuming from checkpoint
[04:45:28] Verified work/wudata_01.log
[04:45:28] Verified work/wudata_01.trr
[04:45:28] Verified work/wudata_01.xtc
[04:45:28] Verified work/wudata_01.edr
[04:45:28] Completed 16772 out of 2000000 steps (0%)
NOTE: Turning on dynamic load balancing
[04:52:19] Completed 20000 out of 2000000 steps (1%)
[05:22:11] Posted data.
[05:22:12] Initial: 0000; - Uploaded at ~19 kB/s
[05:22:14] - Averaged speed for that direction ~19 kB/s
[05:22:14] + Results successfully sent
[05:22:14] Thank you for your contribution to Folding@Home.
[05:22:14] + Number of Units Completed: 185
[05:23:39] + Sent 1 of 1 completed units to the server
[05:23:39] - Autosend completed
[05:34:33] Completed 40000 out of 2000000 steps (2%)
[06:19:06] Completed 60000 out of 2000000 steps (3%)
[07:03:13] Completed 80000 out of 2000000 steps (4%)
[07:45:20] Completed 100000 out of 2000000 steps (5%)
[08:27:28] Completed 120000 out of 2000000 steps (6%)
[09:09:38] Completed 140000 out of 2000000 steps (7%)
[09:51:41] Completed 160000 out of 2000000 steps (8%)
[10:33:43] Completed 180000 out of 2000000 steps (9%)
[11:15:47] Completed 200000 out of 2000000 steps (10%)
[11:23:39] - Autosending finished units... [November 17 11:23:39 UTC]
[11:23:39] Trying to send all finished work units
[11:23:39] + No unsent completed units remaining.
[11:23:39] - Autosend completed
[11:37:57] ***** Got a SIGTERM signal (15)
[11:37:57] Killing all core threads
Folding@Home Client Shutdown.
Received the second INT/TERM signal, stopping at the next step
Average load imbalance: 0.3 %
Part of the total run time spent waiting due to load imbalance: 0.2 %
Steps where the load balancing was limited by -rdd, -rcon and/or -dds: X 0 %
Parallel run - timing based on wallclock.
NODE (s) Real (s) (%)
Time: 24749.879 24749.879 100.0
6h52:29
(Mnbf/s) (GFlops) (ns/day) (hour/ns)
Performance: 68.901 3.856 3.378 7.105
Thanx for Using GROMACS - Have a Nice Day
Note: Please read the license agreement (fah6 -license). Further
use of this software requires that you have read and accepted this agreement.
2 cores detected
--- Opening Log file [November 17 11:39:36 UTC]
# Linux SMP Console Edition ###################################################
###############################################################################
Folding@Home Client Version 6.29
http://folding.stanford.edu
###############################################################################
###############################################################################
Launch directory: /home/folding/fah
Executable: ./fah6
Arguments: -verbosity 9 -smp
[11:39:36] - Ask before connecting: No
[11:39:36] - User name: chrisretusn (Team 2291)
[11:39:36] - User ID: X
[11:39:36] - Machine ID: 1
[11:39:36]
[11:39:37] Loaded queue successfully.
[11:39:37]
[11:39:37] - Autosending finished units... [11:39:37]
[11:39:37] + Processing work unit
[11:39:37] Trying to send all finished work units
[11:39:37] Core required: FahCore_a3.exe
[11:39:37] + No unsent completed units remaining.
[11:39:37] - Autosend completed
[11:39:37] Core found.
[11:39:37] Working on queue slot 01 [November 17 11:39:37 UTC]
[11:39:37] + Working ...
[11:39:37] - Calling './FahCore_a3.exe -dir work/ -nice 19 -suffix 01 -np 2 -checkpoint 15 -verbose -lifeline 1615 -version 629'
[11:39:37]
[11:39:37] *------------------------------*
[11:39:37] Folding@Home Gromacs SMP Core
[11:39:37] Version 2.22 (June 10, 2010)
[11:39:38]
[11:39:38] Preparing to commence simulation
[11:39:38] - Looking at optimizations...
[11:39:38] - Files status OK
[11:39:38] - Expanded 763497 -> 1404481 (decompressed 183.9 percent)
[11:39:38] Called DecompressByteArray: compressed_data_size=763497 data_size=1404481, decompressed_data_size=1404481 diff=0
[11:39:38] - Digital signature verified
[11:39:38]
[11:39:38] Project: 6702 (Run 4, Clone 58, Gen 71)
[11:39:38]
[11:39:38] Assembly optimizations on if available.
[11:39:38] Entering M.D.
[11:39:44] Using Gromacs checkpoints
Starting 2 threads
NNODES=2, MYRANK=0, HOSTNAME=thread #0
NNODES=2, MYRANK=1, HOSTNAME=thread #1
Reading file work/wudata_01.tpr, VERSION 4.0.99_development_20090605 (single precision)
Reading checkpoint file work/wudata_01.cpt generated: Wed Nov 17 19:37:57 2010
Making 1D domain decomposition 2 x 1 x 1
starting mdrun 'VSD in POPC and water, neutralized'
144000000 steps, 720000.0 ps (continuing from step 142210301, 711051.5 ps).
[11:39:45] Resuming from checkpoint
[11:39:45] Verified work/wudata_01.log
[11:39:45] Verified work/wudata_01.trr
[11:39:45] Verified work/wudata_01.xtc
[11:39:45] Verified work/wudata_01.edr
[11:39:45] Completed 210301 out of 2000000 steps (10%)
NOTE: Turning on dynamic load balancing
[12:00:32] Completed 220000 out of 2000000 steps (11%)
[12:50:02] Completed 240000 out of 2000000 steps (12%)
[13:15:40] ***** Got a SIGTERM signal (15)
[13:15:40] Killing all core threads
Folding@Home Client Shutdown.
Received the second INT/TERM signal, stopping at the next step
Average load imbalance: 1.7 %
Part of the total run time spent waiting due to load imbalance: 1.0 %
Steps where the load balancing was limited by -rdd, -rcon and/or -dds: X 0 %
Parallel run - timing based on wallclock.
NODE (s) Real (s) (%)
Time: 5756.211 5756.211 100.0
1h35:56
(Mnbf/s) (GFlops) (ns/day) (hour/ns)
Performance: 62.651 3.507 3.074 7.807
Thanx for Using GROMACS - Have a Nice Day
Note: Please read the license agreement (fah6 -license). Further
use of this software requires that you have read and accepted this agreement.
2 cores detected
--- Opening Log file [November 17 13:17:19 UTC]
# Linux SMP Console Edition ###################################################
###############################################################################
Folding@Home Client Version 6.29
http://folding.stanford.edu
###############################################################################
###############################################################################
Launch directory: /home/folding/fah
Executable: ./fah6
Arguments: -verbosity 9 -smp
[13:17:19] - Ask before connecting: No
[13:17:19] - User name: chrisretusn (Team 2291)
[13:17:19] - User ID: X
[13:17:19] - Machine ID: 1
[13:17:19]
[13:17:19] Loaded queue successfully.
[13:17:19]
[13:17:19] - Autosending finished units... [13:17:19]
[13:17:19] + Processing work unit
[13:17:19] Trying to send all finished work units
[13:17:19] Core required: FahCore_a3.exe
[13:17:19] + No unsent completed units remaining.
[13:17:19] - Autosend completed
[13:17:19] Core found.
[13:17:19] Working on queue slot 01 [November 17 13:17:19 UTC]
[13:17:19] + Working ...
[13:17:19] - Calling './FahCore_a3.exe -dir work/ -nice 19 -suffix 01 -np 2 -checkpoint 15 -verbose -lifeline 1650 -version 629'
[13:17:20]
[13:17:20] *------------------------------*
[13:17:20] Folding@Home Gromacs SMP Core
[13:17:20] Version 2.22 (June 10, 2010)
[13:17:20]
[13:17:20] Preparing to commence simulation
[13:17:20] - Looking at optimizations...
[13:17:20] - Files status OK
[13:17:20] - Expanded 763497 -> 1404481 (decompressed 183.9 percent)
[13:17:20] Called DecompressByteArray: compressed_data_size=763497 data_size=1404481, decompressed_data_size=1404481 diff=0
[13:17:20] - Digital signature verified
[13:17:20]
[13:17:20] Project: 6702 (Run 4, Clone 58, Gen 71)
[13:17:20]
[13:17:20] Assembly optimizations on if available.
[13:17:20] Entering M.D.
[13:17:26] Using Gromacs checkpoints
Starting 2 threads
NNODES=2, MYRANK=1, HOSTNAME=thread #1
NNODES=2, MYRANK=0, HOSTNAME=thread #0
Reading file work/wudata_01.tpr, VERSION 4.0.99_development_20090605 (single precision)
Reading checkpoint file work/wudata_01.cpt generated: Wed Nov 17 21:15:40 2010
Making 1D domain decomposition 2 x 1 x 1
starting mdrun 'VSD in POPC and water, neutralized'
144000000 steps, 720000.0 ps (continuing from step 142251264, 711256.3 ps).
[13:17:27] Resuming from checkpoint
[13:17:27] Verified work/wudata_01.log
[13:17:27] Verified work/wudata_01.trr
[13:17:27] Verified work/wudata_01.xtc
[13:17:27] Verified work/wudata_01.edr
[13:17:28] Completed 251264 out of 2000000 steps (12%)
[13:41:16] Completed 260000 out of 2000000 steps (13%)
[14:25:53] Completed 280000 out of 2000000 steps (14%)
[15:09:52] Completed 300000 out of 2000000 steps (15%)
[15:53:49] Completed 320000 out of 2000000 steps (16%)
[16:37:59] Completed 340000 out of 2000000 steps (17%)
[17:21:47] Completed 360000 out of 2000000 steps (18%)
[18:05:09] Completed 380000 out of 2000000 steps (19%)
[18:48:24] Completed 400000 out of 2000000 steps (20%)
[19:17:19] - Autosending finished units... [November 17 19:17:19 UTC]
[19:17:19] Trying to send all finished work units
[19:17:19] + No unsent completed units remaining.
[19:17:19] - Autosend completed
[19:32:04] Completed 420000 out of 2000000 steps (21%)
[20:15:43] Completed 440000 out of 2000000 steps (22%)
[20:59:09] Completed 460000 out of 2000000 steps (23%)
[21:42:11] Completed 480000 out of 2000000 steps (24%)
[22:24:39] Completed 500000 out of 2000000 steps (25%)
[23:10:17] Completed 520000 out of 2000000 steps (26%)
[00:00:45] Completed 540000 out of 2000000 steps (27%)
[00:39:42] ***** Got a SIGTERM signal (15)
[00:39:42] Killing all core threads
Folding@Home Client Shutdown.
Received the TERM signal, stopping at the next NS step
Average load imbalance: 5.2 %
Part of the total run time spent waiting due to load imbalance: 3.2 %
Parallel run - timing based on wallclock.
NODE (s) Real (s) (%)
Time: 40935.728 40935.728 100.0
11h22:15
(Mnbf/s) (GFlops) (ns/day) (hour/ns)
Performance: 65.906 3.688 3.232 7.426
Thanx for Using GROMACS - Have a Nice Day
Note: Please read the license agreement (fah6 -license). Further
use of this software requires that you have read and accepted this agreement.
2 cores detected
--- Opening Log file [November 18 00:41:41 UTC]
# Linux SMP Console Edition ###################################################
###############################################################################
Folding@Home Client Version 6.29
http://folding.stanford.edu
###############################################################################
###############################################################################
Launch directory: /home/folding/fah
Executable: ./fah6
Arguments: -verbosity 9 -smp
[00:41:41] - Ask before connecting: No
[00:41:41] - User name: chrisretusn (Team 2291)
[00:41:41] - User ID: X
[00:41:41] - Machine ID: 1
[00:41:41]
[00:41:41] Loaded queue successfully.
[00:41:41]
[00:41:41] + Processing work unit
[00:41:41] Core required: FahCore_a3.exe
[00:41:41] - Autosending finished units... [November 18 00:41:41 UTC]
[00:41:41] Trying to send all finished work units
[00:41:41] + No unsent completed units remaining.
[00:41:41] - Autosend completed
[00:41:41] Core found.
[00:41:41] Working on queue slot 01 [November 18 00:41:41 UTC]
[00:41:41] + Working ...
[00:41:41] - Calling './FahCore_a3.exe -dir work/ -nice 19 -suffix 01 -np 2 -checkpoint 15 -verbose -lifeline 1624 -version 629'
[00:41:41]
[00:41:41] *------------------------------*
[00:41:41] Folding@Home Gromacs SMP Core
[00:41:41] Version 2.22 (June 10, 2010)
[00:41:42]
[00:41:42] Preparing to commence simulation
[00:41:42] - Looking at optimizations...
[00:41:42] - Files status OK
[00:41:42] - Expanded 763497 -> 1404481 (decompressed 183.9 percent)
[00:41:42] Called DecompressByteArray: compressed_data_size=763497 data_size=1404481, decompressed_data_size=1404481 diff=0
[00:41:42] - Digital signature verified
[00:41:42]
[00:41:42] Project: 6702 (Run 4, Clone 58, Gen 71)
[00:41:42]
[00:41:42] Assembly optimizations on if available.
[00:41:42] Entering M.D.
[00:41:48] Using Gromacs checkpoints
Starting 2 threads
NNODES=2, MYRANK=0, HOSTNAME=thread #0
NNODES=2, MYRANK=1, HOSTNAME=thread #1
Reading file work/wudata_01.tpr, VERSION 4.0.99_development_20090605 (single precision)
Reading checkpoint file work/wudata_01.cpt generated: Thu Nov 18 08:39:42 2010
Making 1D domain decomposition 2 x 1 x 1
starting mdrun 'VSD in POPC and water, neutralized'
144000000 steps, 720000.0 ps (continuing from step 142557520, 712787.6 ps).
[00:41:49] Resuming from checkpoint
[00:41:49] Verified work/wudata_01.log
[00:41:49] Verified work/wudata_01.trr
[00:41:50] Verified work/wudata_01.xtc
[00:41:50] Verified work/wudata_01.edr
[00:41:50] Completed 557520 out of 2000000 steps (27%)
[00:47:12] Completed 560000 out of 2000000 steps (28%)
[01:33:47] Completed 580000 out of 2000000 steps (29%)
[02:22:15] Completed 600000 out of 2000000 steps (30%)
[03:09:53] Completed 620000 out of 2000000 steps (31%)
[03:56:59] Completed 640000 out of 2000000 steps (32%)
[04:44:43] Completed 660000 out of 2000000 steps (33%)
[05:31:52] Completed 680000 out of 2000000 steps (34%)
[06:20:08] Completed 700000 out of 2000000 steps (35%)
[06:41:41] - Autosending finished units... [November 18 06:41:41 UTC]
[06:41:41] Trying to send all finished work units
[06:41:41] + No unsent completed units remaining.
[06:41:41] - Autosend completed
[07:07:54] Completed 720000 out of 2000000 steps (36%)
[07:52:08] Completed 740000 out of 2000000 steps (37%)
[08:37:33] Completed 760000 out of 2000000 steps (38%)
[09:21:57] Completed 780000 out of 2000000 steps (39%)
[10:05:42] Completed 800000 out of 2000000 steps (40%)
[10:49:17] Completed 820000 out of 2000000 steps (41%)
[11:33:53] Completed 840000 out of 2000000 steps (42%)
[12:20:04] Completed 860000 out of 2000000 steps (43%)
[12:41:41] - Autosending finished units... [November 18 12:41:41 UTC]
[12:41:41] Trying to send all finished work units
[12:41:41] + No unsent completed units remaining.
[12:41:41] - Autosend completed
[13:10:07] Completed 880000 out of 2000000 steps (44%)
[14:01:49] Completed 900000 out of 2000000 steps (45%)
[14:54:04] Completed 920000 out of 2000000 steps (46%)
[15:40:42] Completed 940000 out of 2000000 steps (47%)
[16:27:24] Completed 960000 out of 2000000 steps (48%)
[17:13:44] Completed 980000 out of 2000000 steps (49%)
[17:59:54] Completed 1000000 out of 2000000 steps (50%)
[18:41:41] - Autosending finished units... [November 18 18:41:41 UTC]
[18:41:41] Trying to send all finished work units
[18:41:41] + No unsent completed units remaining.
[18:41:41] - Autosend completed
[18:46:24] Completed 1020000 out of 2000000 steps (51%)
[19:33:17] Completed 1040000 out of 2000000 steps (52%)
[20:20:18] Completed 1060000 out of 2000000 steps (53%)
[21:06:55] Completed 1080000 out of 2000000 steps (54%)
[21:53:48] Completed 1100000 out of 2000000 steps (55%)
[22:41:21] ***** Got a SIGTERM signal (15)
[22:41:21] Killing all core threads
Folding@Home Client Shutdown.
Received the TERM signal, stopping at the next NS step
Received the second INT/TERM signal, stopping at the next step
Note: Please read the license agreement (fah6 -license). Further
use of this software requires that you have read and accepted this agreement.
2 cores detectedCode: Select all
--- Opening Log file [November 18 22:43:06 UTC]
# Linux SMP Console Edition ###################################################
###############################################################################
Folding@Home Client Version 6.29
http://folding.stanford.edu
###############################################################################
###############################################################################
Launch directory: /home/folding/fah
Executable: ./fah6
Arguments: -verbosity 9 -smp
[22:43:06] - Ask before connecting: No
[22:43:06] - User name: chrisretusn (Team 2291)
[22:43:06] - User ID: X
[22:43:06] - Machine ID: 1
[22:43:06]
[22:43:06] Loaded queue successfully.
[22:43:06]
[22:43:06] - Autosending finished units... [22:43:06]
[22:43:06] + Processing work unit
[22:43:06] Trying to send all finished work units
[22:43:06] Core required: FahCore_a3.exe
[22:43:06] + No unsent completed units remaining.
[22:43:06] - Autosend completed
[22:43:06] Core found.
[22:43:06] Working on queue slot 01 [November 18 22:43:06 UTC]
[22:43:06] + Working ...
[22:43:06] - Calling './FahCore_a3.exe -dir work/ -nice 19 -suffix 01 -np 2 -checkpoint 15 -verbose -lifeline 1639 -version 629'
[22:43:07]
[22:43:07] *------------------------------*
[22:43:07] Folding@Home Gromacs SMP Core
[22:43:07] Version 2.22 (June 10, 2010)
[22:43:07]
[22:43:07] Preparing to commence simulation
[22:43:07] - Looking at optimizations...
[22:43:07] - Files status OK
[22:43:07] - Expanded 763497 -> 1404481 (decompressed 183.9 percent)
[22:43:07] Called DecompressByteArray: compressed_data_size=763497 data_size=1404481, decompressed_data_size=1404481 diff=0
[22:43:07] - Digital signature verified
[22:43:07]
[22:43:07] Project: 6702 (Run 4, Clone 58, Gen 71)
[22:43:07]
[22:43:07] Assembly optimizations on if available.
[22:43:07] Entering M.D.
[22:43:13] Using Gromacs checkpoints
Starting 2 threads
NNODES=2, MYRANK=0, HOSTNAME=thread #0
NNODES=2, MYRANK=1, HOSTNAME=thread #1
Reading file work/wudata_01.tpr, VERSION 4.0.99_development_20090605 (single precision)
Reading checkpoint file work/wudata_01.cpt generated: Fri Nov 19 06:41:21 2010
Making 1D domain decomposition 2 x 1 x 1
starting mdrun 'VSD in POPC and water, neutralized'
144000000 steps, 720000.0 ps (continuing from step 143117708, 715588.5 ps).
-------------------------------------------------------
Program mdrun, VERSION 4.0.99-dev-20100610-b6a86-dirty
Source code file: /data0/FAHdev/a3_development/gromacs/src/kernel/md.c, line: 1417
Fatal error:
Checkpoint error on step 0
For more information and tips for troubleshooting, please check the GROMACS
website at http://www.gromacs.org/Documentation/Errors
-------------------------------------------------------
Thanx for Using GROMACS - Have a Nice Day
: No such process
[22:43:14] fcSaveRestoreState: I/O failed dir=0, var=0000000042F33950, varsize=20
[22:43:14] fcCheckPointResume: failure in call to fcSaveRestoreState() to restore cpt hash.
[22:43:14] Resuming from checkpoint
[22:43:14] detected an invalid checkpoint. Restarting...fcSaveRestoreState: I/O failed dir=0, var=0000000040F0FA30, varsize=20
[22:43:14] fcCheckPointResume: failure in call to fcSaveRestoreState() to restore cpt hash.
[22:44:07]
[22:44:07] Folding@home Core Shutdown: UNKNOWN_ERROR
[22:44:07] CoreStatus = 62 (98)
[22:44:07] + Restarting core (settings changed)
[22:44:07]
[22:44:07] + Processing work unit
[22:44:07] Core required: FahCore_a3.exe
[22:44:07] Core found.
[22:44:07] Working on queue slot 01 [November 18 22:44:07 UTC]
[22:44:07] + Working ...
[22:44:07] - Calling './FahCore_a3.exe -dir work/ -nice 19 -suffix 01 -np 2 -checkpoint 15 -notermcheck -verbose -lifeline 1639 -version 629'
[22:44:07]
[22:44:07] *------------------------------*
[22:44:07] Folding@Home Gromacs SMP Core
[22:44:07] Version 2.22 (June 10, 2010)
[22:44:07]
[22:44:07] Preparing to commence simulation
[22:44:07] - Looking at optimizations...
[22:44:07] - Not checking prior termination.
[22:44:08] - Expanded 763497 -> 1404481 (decompressed 183.9 percent)
[22:44:08] Called DecompressByteArray: compressed_data_size=763497 data_size=1404481, decompressed_data_size=1404481 diff=0
[22:44:08] - Digital signature verified
[22:44:08]
[22:44:08] Project: 6702 (Run 4, Clone 58, Gen 71)
[22:44:08]
[22:44:08] Assembly optimizations on if available.
[22:44:08] Entering M.D.
Starting 2 threads
NNODES=2, MYRANK=0, HOSTNAME=thread #0
NNODES=2, MYRANK=1, HOSTNAME=thread #1
Reading file work/wudata_01.tpr, VERSION 4.0.99_development_20090605 (single precision)
Making 1D domain decomposition 2 x 1 x 1
starting mdrun 'VSD in POPC and water, neutralized'
144000000 steps, 720000.0 ps (continuing from step 142000000, 710000.0 ps).
[22:44:14] Completed 0 out of 2000000 steps (0%)
[23:06:23] ***** Got a SIGTERM signal (15)
[23:06:23] Killing all core threads
Folding@Home Client Shutdown.
Received the second INT/TERM signal, stopping at the next step
Average load imbalance: 6.8 %
Part of the total run time spent waiting due to load imbalance: 4.1 %
Parallel run - timing based on wallclock.
NODE (s) Real (s) (%)
Time: 1329.853 1329.853 100.0
22:09
(Mnbf/s) (GFlops) (ns/day) (hour/ns)
Performance: 65.338 3.656 3.202 7.495
Thanx for Using GROMACS - Have a Nice Day
Note: Please read the license agreement (fah6 -license). Further
use of this software requires that you have read and accepted this agreement.
2 cores detected
--- Opening Log file [November 18 23:08:07 UTC]
# Linux SMP Console Edition ###################################################
###############################################################################
Folding@Home Client Version 6.29
http://folding.stanford.edu
###############################################################################
###############################################################################
Launch directory: /home/folding/fah
Executable: ./fah6
Arguments: -verbosity 9 -smp
[23:08:07] - Ask before connecting: No
[23:08:07] - User name: chrisretusn (Team 2291)
[23:08:07] - User ID: X
[23:08:07] - Machine ID: 1
[23:08:07]
[23:08:07] Loaded queue successfully.
[23:08:07]
[23:08:07] - Autosending finished units... [23:08:07]
[23:08:07] + Processing work unit
[23:08:07] Trying to send all finished work units
[23:08:07] Core required: FahCore_a3.exe
[23:08:07] + No unsent completed units remaining.
[23:08:07] - Autosend completed
[23:08:07] Core found.
[23:08:07] Working on queue slot 01 [November 18 23:08:07 UTC]
[23:08:07] + Working ...
[23:08:07] - Calling './FahCore_a3.exe -dir work/ -nice 19 -suffix 01 -np 2 -checkpoint 15 -verbose -lifeline 1623 -version 629'
[23:08:08]
[23:08:08] *------------------------------*
[23:08:08] Folding@Home Gromacs SMP Core
[23:08:08] Version 2.22 (June 10, 2010)
[23:08:08]
[23:08:08] Preparing to commence simulation
[23:08:08] - Looking at optimizations...
[23:08:08] - Files status OK
[23:08:08] - Expanded 763497 -> 1404481 (decompressed 183.9 percent)
[23:08:08] Called DecompressByteArray: compressed_data_size=763497 data_size=1404481, decompressed_data_size=1404481 diff=0
[23:08:08] - Digital signature verified
[23:08:08]
[23:08:08] Project: 6702 (Run 4, Clone 58, Gen 71)
[23:08:08]
[23:08:08] Assembly optimizations on if available.
[23:08:08] Entering M.D.
[23:08:14] Using Gromacs checkpoints
Starting 2 threads
NNODES=2, MYRANK=1, HOSTNAME=thread #1
NNODES=2, MYRANK=0, HOSTNAME=thread #0
Reading file work/wudata_01.tpr, VERSION 4.0.99_development_20090605 (single precision)
Reading checkpoint file work/wudata_01.cpt generated: Fri Nov 19 07:06:23 2010
Making 1D domain decomposition 2 x 1 x 1
starting mdrun 'VSD in POPC and water, neutralized'
144000000 steps, 720000.0 ps (continuing from step 142009856, 710049.3 ps).
[23:08:15] Resuming from checkpoint
[23:08:15] Verified work/wudata_01.log
[23:08:15] Verified work/wudata_01.trr
[23:08:15] Verified work/wudata_01.xtc
[23:08:15] Verified work/wudata_01.edr
[23:08:16] Completed 9856 out of 2000000 steps (0%)
NOTE: Turning on dynamic load balancing
[23:32:34] Completed 20000 out of 2000000 steps (1%)
[23:48:10] ***** Got a SIGTERM signal (15)
[23:48:10] Killing all core threads
Folding@Home Client Shutdown.
Received the second INT/TERM signal, stopping at the next step
Average load imbalance: 1.8 %
Part of the total run time spent waiting due to load imbalance: 1.1 %
Steps where the load balancing was limited by -rdd, -rcon and/or -dds: X 0 %
Parallel run - timing based on wallclock.
NODE (s) Real (s) (%)
Time: 2395.545 2395.545 100.0
39:55
(Mnbf/s) (GFlops) (ns/day) (hour/ns)
Performance: 61.553 3.445 3.016 7.957
Thanx for Using GROMACS - Have a Nice Day
Note: Please read the license agreement (fah6 -license). Further
use of this software requires that you have read and accepted this agreement.
2 cores detected
--- Opening Log file [November 18 23:49:51 UTC]
# Linux SMP Console Edition ###################################################
###############################################################################
Folding@Home Client Version 6.29
http://folding.stanford.edu
###############################################################################
###############################################################################
Launch directory: /home/folding/fah
Executable: ./fah6
Arguments: -verbosity 9 -smp
[23:49:51] - Ask before connecting: No
[23:49:51] - User name: chrisretusn (Team 2291)
[23:49:51] - User ID: X
[23:49:51] - Machine ID: 1
[23:49:51]
[23:49:51] Loaded queue successfully.
[23:49:51]
[23:49:51] - Autosending finished units... [23:49:51]
[23:49:51] + Processing work unit
[23:49:51] Trying to send all finished work units
[23:49:51] Core required: FahCore_a3.exe
[23:49:51] + No unsent completed units remaining.
[23:49:51] - Autosend completed
[23:49:51] Core found.
[23:49:51] Working on queue slot 01 [November 18 23:49:51 UTC]
[23:49:51] + Working ...
[23:49:51] - Calling './FahCore_a3.exe -dir work/ -nice 19 -suffix 01 -np 2 -checkpoint 15 -verbose -lifeline 1624 -version 629'
[23:49:51]
[23:49:51] *------------------------------*
[23:49:51] Folding@Home Gromacs SMP Core
[23:49:51] Version 2.22 (June 10, 2010)
[23:49:51]
[23:49:51] Preparing to commence simulation
[23:49:51] - Looking at optimizations...
[23:49:51] - Files status OK
[23:49:52] - Expanded 763497 -> 1404481 (decompressed 183.9 percent)
[23:49:52] Called DecompressByteArray: compressed_data_size=763497 data_size=1404481, decompressed_data_size=1404481 diff=0
[23:49:52] - Digital signature verified
[23:49:52]
[23:49:52] Project: 6702 (Run 4, Clone 58, Gen 71)
[23:49:52]
[23:49:52] Assembly optimizations on if available.
[23:49:52] Entering M.D.
[23:49:58] Using Gromacs checkpoints
Starting 2 threads
NNODES=2, MYRANK=0, HOSTNAME=thread #0
NNODES=2, MYRANK=1, HOSTNAME=thread #1
Reading file work/wudata_01.tpr, VERSION 4.0.99_development_20090605 (single precision)
Reading checkpoint file work/wudata_01.cpt generated: Fri Nov 19 07:48:10 2010
Making 1D domain decomposition 2 x 1 x 1
starting mdrun 'VSD in POPC and water, neutralized'
144000000 steps, 720000.0 ps (continuing from step 142026581, 710132.9 ps).
[23:49:59] Resuming from checkpoint
[23:49:59] Verified work/wudata_01.log
[23:49:59] Verified work/wudata_01.trr
[23:49:59] Verified work/wudata_01.xtc
[23:49:59] Verified work/wudata_01.edr
[23:49:59] Completed 26581 out of 2000000 steps (1%)
[00:15:07] ***** Got a SIGTERM signal (15)
[00:15:07] Killing all core threads
Folding@Home Client Shutdown.
Received the second INT/TERM signal, stopping at the next step
Average load imbalance: 4.8 %
Part of the total run time spent waiting due to load imbalance: 3.0 %
Parallel run - timing based on wallclock.
NODE (s) Real (s) (%)
Time: 1508.896 1508.896 100.0
25:08
(Mnbf/s) (GFlops) (ns/day) (hour/ns)
Performance: 66.148 3.702 3.243 7.400
Thanx for Using GROMACS - Have a Nice Day
Note: Please read the license agreement (fah6 -license). Further
use of this software requires that you have read and accepted this agreement.
2 cores detected
--- Opening Log file [November 19 00:16:49 UTC]
# Linux SMP Console Edition ###################################################
###############################################################################
Folding@Home Client Version 6.29
http://folding.stanford.edu
###############################################################################
###############################################################################
Launch directory: /home/folding/fah
Executable: ./fah6
Arguments: -verbosity 9 -smp
[00:16:49] - Ask before connecting: No
[00:16:49] - User name: chrisretusn (Team 2291)
[00:16:49] - User ID: X
[00:16:49] - Machine ID: 1
[00:16:49]
[00:16:49] Loaded queue successfully.
[00:16:49]
[00:16:49] - Autosending finished units... [00:16:49]
[00:16:49] + Processing work unit
[00:16:49] Trying to send all finished work units
[00:16:49] Core required: FahCore_a3.exe
[00:16:49] + No unsent completed units remaining.
[00:16:49] - Autosend completed
[00:16:49] Core found.
[00:16:50] Working on queue slot 01 [November 19 00:16:50 UTC]
[00:16:50] + Working ...
[00:16:50] - Calling './FahCore_a3.exe -dir work/ -nice 19 -suffix 01 -np 2 -checkpoint 15 -verbose -lifeline 1644 -version 629'
[00:16:50]
[00:16:50] *------------------------------*
[00:16:50] Folding@Home Gromacs SMP Core
[00:16:50] Version 2.22 (June 10, 2010)
[00:16:50]
[00:16:50] Preparing to commence simulation
[00:16:50] - Looking at optimizations...
[00:16:50] - Files status OK
[00:16:50] - Expanded 763497 -> 1404481 (decompressed 183.9 percent)
[00:16:50] Called DecompressByteArray: compressed_data_size=763497 data_size=1404481, decompressed_data_size=1404481 diff=0
[00:16:50] - Digital signature verified
[00:16:50]
[00:16:50] Project: 6702 (Run 4, Clone 58, Gen 71)
[00:16:50]
[00:16:50] Assembly optimizations on if available.
[00:16:50] Entering M.D.
[00:16:56] Using Gromacs checkpoints
Starting 2 threads
NNODES=2, MYRANK=0, HOSTNAME=thread #0
NNODES=2, MYRANK=1, HOSTNAME=thread #1
Reading file work/wudata_01.tpr, VERSION 4.0.99_development_20090605 (single precision)
Reading checkpoint file work/wudata_01.cpt generated: Fri Nov 19 08:15:07 2010
Making 1D domain decomposition 2 x 1 x 1
starting mdrun 'VSD in POPC and water, neutralized'
144000000 steps, 720000.0 ps (continuing from step 142037908, 710189.5 ps).
[00:16:57] Resuming from checkpoint
[00:16:57] Verified work/wudata_01.log
[00:16:57] Verified work/wudata_01.trr
[00:16:57] Verified work/wudata_01.xtc
[00:16:57] Verified work/wudata_01.edr
[00:16:58] Completed 37908 out of 2000000 steps (1%)
[00:21:30] Completed 40000 out of 2000000 steps (2%)
[01:08:01] Completed 60000 out of 2000000 steps (3%)
[02:06:48] Completed 80000 out of 2000000 steps (4%)
[02:52:17] Completed 100000 out of 2000000 steps (5%)
[03:35:30] Completed 120000 out of 2000000 steps (6%)
[04:19:17] Completed 140000 out of 2000000 steps (7%)
[05:03:23] Completed 160000 out of 2000000 steps (8%)
[05:47:53] Completed 180000 out of 2000000 steps (9%)
[06:16:49] - Autosending finished units... [November 19 06:16:49 UTC]
[06:16:49] Trying to send all finished work units
[06:16:49] + No unsent completed units remaining.
[06:16:49] - Autosend completed
[06:32:10] Completed 200000 out of 2000000 steps (10%)
[07:16:31] Completed 220000 out of 2000000 steps (11%)
[08:01:30] Completed 240000 out of 2000000 steps (12%)
[08:46:47] Completed 260000 out of 2000000 steps (13%)
[09:34:13] Completed 280000 out of 2000000 steps (14%)
[10:27:51] Completed 300000 out of 2000000 steps (15%)
[11:21:48] Completed 320000 out of 2000000 steps (16%)
[12:15:18] Completed 340000 out of 2000000 steps (17%)
[12:16:49] - Autosending finished units... [November 19 12:16:49 UTC]
[12:16:49] Trying to send all finished work units
[12:16:49] + No unsent completed units remaining.
[12:16:49] - Autosend completed
NOTE: Turning on dynamic load balancing
[12:57:37] Completed 360000 out of 2000000 steps (18%)
[13:39:44] Completed 380000 out of 2000000 steps (19%)
[14:21:52] Completed 400000 out of 2000000 steps (20%)
[15:03:55] Completed 420000 out of 2000000 steps (21%)
[15:45:52] Completed 440000 out of 2000000 steps (22%)
[16:27:52] Completed 460000 out of 2000000 steps (23%)
[17:09:54] Completed 480000 out of 2000000 steps (24%)
[17:51:54] Completed 500000 out of 2000000 steps (25%)
[18:16:49] - Autosending finished units... [November 19 18:16:49 UTC]
[18:16:49] Trying to send all finished work units
[18:16:49] + No unsent completed units remaining.
[18:16:49] - Autosend completed
[18:33:58] Completed 520000 out of 2000000 steps (26%)
[19:16:01] Completed 540000 out of 2000000 steps (27%)
[19:58:04] Completed 560000 out of 2000000 steps (28%)
[20:40:09] Completed 580000 out of 2000000 steps (29%)
[21:22:16] Completed 600000 out of 2000000 steps (30%)
[22:04:20] Completed 620000 out of 2000000 steps (31%)
[22:46:22] Completed 640000 out of 2000000 steps (32%)
[23:28:26] Completed 660000 out of 2000000 steps (33%)
[00:10:28] Completed 680000 out of 2000000 steps (34%)
[00:16:49] - Autosending finished units... [November 20 00:16:49 UTC]
[00:16:49] Trying to send all finished work units
[00:16:49] + No unsent completed units remaining.
[00:16:49] - Autosend completed
[00:52:29] Completed 700000 out of 2000000 steps (35%)
[01:34:35] Completed 720000 out of 2000000 steps (36%)
[02:16:42] Completed 740000 out of 2000000 steps (37%)
[03:06:36] Completed 760000 out of 2000000 steps (38%)
[03:55:04] Completed 780000 out of 2000000 steps (39%)
[04:39:40] Completed 800000 out of 2000000 steps (40%)
[05:24:11] Completed 820000 out of 2000000 steps (41%)
[06:08:50] Completed 840000 out of 2000000 steps (42%)
[06:16:49] - Autosending finished units... [November 20 06:16:49 UTC]
[06:16:49] Trying to send all finished work units
[06:16:49] + No unsent completed units remaining.
[06:16:49] - Autosend completed
[06:53:26] Completed 860000 out of 2000000 steps (43%)
[07:38:13] Completed 880000 out of 2000000 steps (44%)
[08:22:56] Completed 900000 out of 2000000 steps (45%)
[09:07:40] Completed 920000 out of 2000000 steps (46%)
[09:52:24] Completed 940000 out of 2000000 steps (47%)
[10:38:11] Completed 960000 out of 2000000 steps (48%)
[11:24:44] Completed 980000 out of 2000000 steps (49%)
[12:11:10] Completed 1000000 out of 2000000 steps (50%)
[12:16:49] - Autosending finished units... [November 20 12:16:49 UTC]
[12:16:49] Trying to send all finished work units
[12:16:49] + No unsent completed units remaining.
[12:16:49] - Autosend completed
[13:04:11] Completed 1020000 out of 2000000 steps (51%)
[13:48:04] Completed 1040000 out of 2000000 steps (52%)
[14:32:49] Completed 1060000 out of 2000000 steps (53%)
[15:15:04] Completed 1080000 out of 2000000 steps (54%)
[15:57:15] Completed 1100000 out of 2000000 steps (55%)
[16:39:26] Completed 1120000 out of 2000000 steps (56%)
[17:21:38] Completed 1140000 out of 2000000 steps (57%)
[18:03:53] Completed 1160000 out of 2000000 steps (58%)
[18:16:49] - Autosending finished units... [November 20 18:16:49 UTC]
[18:16:49] Trying to send all finished work units
[18:16:49] + No unsent completed units remaining.
[18:16:49] - Autosend completed
[18:46:07] Completed 1180000 out of 2000000 steps (59%)
[19:28:23] Completed 1200000 out of 2000000 steps (60%)
[20:10:36] Completed 1220000 out of 2000000 steps (61%)
[20:52:52] Completed 1240000 out of 2000000 steps (62%)
[21:35:04] Completed 1260000 out of 2000000 steps (63%)
[22:19:38] Completed 1280000 out of 2000000 steps (64%)
[23:06:50] Completed 1300000 out of 2000000 steps (65%)
[23:49:01] Completed 1320000 out of 2000000 steps (66%)
[00:16:49] - Autosending finished units... [November 21 00:16:49 UTC]
[00:16:49] Trying to send all finished work units
[00:16:49] + No unsent completed units remaining.
[00:16:49] - Autosend completed
[00:31:10] Completed 1340000 out of 2000000 steps (67%)
[01:13:18] Completed 1360000 out of 2000000 steps (68%)
[01:55:28] Completed 1380000 out of 2000000 steps (69%)
[02:37:36] Completed 1400000 out of 2000000 steps (70%)
[03:51:27] Completed 1420000 out of 2000000 steps (71%)
[04:35:17] Completed 1440000 out of 2000000 steps (72%)
[05:18:09] Completed 1460000 out of 2000000 steps (73%)
[06:00:54] Completed 1480000 out of 2000000 steps (74%)
[06:16:49] - Autosending finished units... [November 21 06:16:49 UTC]
[06:16:49] Trying to send all finished work units
[06:16:49] + No unsent completed units remaining.
[06:16:49] - Autosend completed
[06:43:44] Completed 1500000 out of 2000000 steps (75%)
[07:46:29] Completed 1520000 out of 2000000 steps (76%)
[08:55:35] Completed 1540000 out of 2000000 steps (77%)
[09:59:45] Completed 1560000 out of 2000000 steps (78%)
[10:48:51] Completed 1580000 out of 2000000 steps (79%)
[11:38:33] Completed 1600000 out of 2000000 steps (80%)
[12:16:49] - Autosending finished units... [November 21 12:16:49 UTC]
[12:16:49] Trying to send all finished work units
[12:16:49] + No unsent completed units remaining.
[12:16:49] - Autosend completed
[12:23:50] Completed 1620000 out of 2000000 steps (81%)
[13:11:43] Completed 1640000 out of 2000000 steps (82%)
[13:58:58] Completed 1660000 out of 2000000 steps (83%)
[14:40:59] Completed 1680000 out of 2000000 steps (84%)
[15:23:00] Completed 1700000 out of 2000000 steps (85%)
[16:05:03] Completed 1720000 out of 2000000 steps (86%)
[16:47:06] Completed 1740000 out of 2000000 steps (87%)
[17:29:11] Completed 1760000 out of 2000000 steps (88%)
[18:11:16] Completed 1780000 out of 2000000 steps (89%)
[18:16:49] - Autosending finished units... [November 21 18:16:49 UTC]
[18:16:49] Trying to send all finished work units
[18:16:49] + No unsent completed units remaining.
[18:16:49] - Autosend completed
[18:53:23] Completed 1800000 out of 2000000 steps (90%)
[19:35:28] Completed 1820000 out of 2000000 steps (91%)
[20:17:30] Completed 1840000 out of 2000000 steps (92%)
[20:59:34] Completed 1860000 out of 2000000 steps (93%)
[21:41:39] Completed 1880000 out of 2000000 steps (94%)
[22:23:46] Completed 1900000 out of 2000000 steps (95%)
[23:05:51] Completed 1920000 out of 2000000 steps (96%)
[23:47:57] Completed 1940000 out of 2000000 steps (97%)
[00:16:49] - Autosending finished units... [November 22 00:16:49 UTC]
[00:16:49] Trying to send all finished work units
[00:16:49] + No unsent completed units remaining.
[00:16:49] - Autosend completed
[00:30:02] Completed 1960000 out of 2000000 steps (98%)
[01:12:03] Completed 1980000 out of 2000000 steps (99%)
[01:54:03] Completed 2000000 out of 2000000 steps (100%)
Writing final coordinates.
Average load imbalance: 0.9 %
Part of the total run time spent waiting due to load imbalance: 0.5 %
Steps where the load balancing was limited by -rdd, -rcon and/or -dds: X 0 %
Parallel run - timing based on wallclock.
NODE (s) Real (s) (%)
Time: 265026.656 265026.656 100.0
3d01h37:06
(Mnbf/s) (GFlops) (ns/day) (hour/ns)
Performance: 65.218 3.650 3.198 7.504
Thanx for Using GROMACS - Have a Nice Day
[01:54:04] DynamicWrapper: Finished Work Unit: sleep=10000
[01:54:14]
[01:54:14] Finished Work Unit:
[01:54:14] - Reading up to 687408 from "work/wudata_01.trr": Read 687408
[01:54:14] trr file hash check passed.
[01:54:14] - Reading up to 42706704 from "work/wudata_01.xtc": Read 42706704
[01:54:14] xtc file hash check passed.
[01:54:14] edr file hash check passed.
[01:54:14] logfile size: 293920
[01:54:14] Leaving Run
[01:54:17] - Writing 43690368 bytes of core data to disk...
[01:54:18] ... Done.
[01:55:51] - Shutting down core
[01:55:51]
[01:55:51] Folding@home Core Shutdown: FINISHED_UNIT
[01:55:53] CoreStatus = 64 (100)
[01:55:53] Unit 1 finished with 18 percent of time to deadline remaining.
[01:55:53] Updated performance fraction: 0.430365
[01:55:53] Sending work to server
[01:55:53] Project: 6702 (Run 4, Clone 58, Gen 71)
[01:55:53] + Attempting to send results [November 22 01:55:53 UTC]
[01:55:53] - Reading file work/wuresults_01.dat from core
[01:55:53] (Read 43690368 bytes from disk)
[01:55:53] Connecting to http://171.64.65.56:8080/
[02:31:56] Posted data.
[02:31:57] Initial: 0000; - Uploaded at ~19 kB/s
[02:31:57] - Averaged speed for that direction ~19 kB/s
[02:31:57] + Results successfully sent
[02:31:57] Thank you for your contribution to Folding@Home.
[02:31:57] + Number of Units Completed: 186
