Folding Forum

Releasing new OpenMM21 projects to BETA Projects number: p14124 on vav4.ocis.temple.edu These simulations are designed to test our understanding the folding mechanism of alpha-helical hairpins. We are trying to study how disulfide cross-linkers and sequence variants affect the folding thermodynamics...

these projects (13781-13783) simulate a millisecond folder NTL9(1-39) with different force fields. We are trying to understand how mutations change the folding landscape, the performance of different force fields, and how we can use new methodology to better identify and efficiently sample mutation-...

Projects number: p13781-13783 on vav3.ocis.temple.edu These projects (13781-13783) simulate a millisecond folder NTL9(1-39) with different force fields. We are trying to understand how mutations change the folding landscape, the performance of different force fields, and how we can use new methodolo...

Releasing new SMP A7(GRO_A7) projects to ADV Projects number: p13738-13749 on vav3.ocis.temple.edu These projects simulate several mutants of well-studied mini-proteins to understand how mutations change the folding landscape, the performance of different force fields, and how to efficiently sample ...

Releasing new SMP A7(GRO_A7) projects to FAH Projects number: p13720-13732 on vav3.ocis.temple.edu These projects simulate the folding of several mutants of Villin peptide, a 3-helical structured protein that folds on the few microsecond time scale. These projects are similar to p8670-8680. We are t...

Releasing new SMP A7(GRO_A7) projects to ADV Projects number: p13720-13732 on vav3.ocis.temple.edu These projects simulate the folding of several mutants of Villin peptide, a 3-helical structured protein that folds on the few microsecond time scale. These projects are similar to p8670-8680. We are t...

Releasing new SMP A4 (GRO_A4) projects p8638-8659 to Fah. These are being served from vav4.ocis.temple.edu These projects simulate the folding of several mutants of WW domain, a 35-residue beta-sheet protein that folds on the microsecond timescale. We are trying to understand how mutations change th...

Releasing new SMP (GRO_A7) projects p8670-8680 to FAH These are being served from vav3.ocis.temple.edu These projects simulate the folding of several mutants of Villin peptide, a 3-helical structured protein that folds on the few microsecond time scale. We are trying to understand how mutations chan...

Hi Bruce,

Thanks for your reply.

I will wait a couple of more days to collect more log files to see how often/which cleint etc. to have this error and open a github ticket then .

--Hongbin

Hi all, We just found out some error message from the log files, but it is only for GRO A7 jobs. We double checked all my finished trajs, and they had no problems. We think the error meaage is caused by Clients. Do we need to worry about it? How to let our Cleint fix it? Thanks. --Hongbin 6:35:50:I2...

Releasing new SMP (GRO_A7) projects p8670-8680 to ADV These are being served from vav3.ocis.temple.edu These projects simulate the folding of several mutants of Villin peptide, a 3-helical structured protein that folds on the few microsecond time scale. We are trying to understand how mutations chan...

Releasing new SMP A4 (GRO_A4) projects p8638-8659 to Adv. These are being served from vav4.ocis.temple.edu These projects simulate the folding of several mutants of WW domain, a 35-residue beta-sheet protein that folds on the microsecond timescale. We are trying to understand how mutations change th...