Code: Select all
[09:57:00] Initial: 0000; - Receiving payload (expected size: 1142751)Code: Select all
[09:56:51] - Autosending finished units... [August 27 09:56:51 UTC]
[09:56:51] Trying to send all finished work units
[09:56:51] + No unsent completed units remaining.
[09:56:51] - Autosend completed
[09:56:51] - Preparing to get new work unit...
[09:56:51] + Attempting to get work packet
[09:56:51] - Will indicate memory of 752 MB
[09:56:51] - Connecting to assignment server
[09:56:51] Connecting to http://assign.stanford.edu:8080/
[09:56:54] Posted data.
[09:56:54] Initial: 40AB; - Successful: assigned to (171.64.65.56).
[09:56:54] + News From Folding@Home: Welcome to Folding@Home
[09:56:54] Loaded queue successfully.
[09:56:54] Connecting to http://171.64.65.56:8080/
[09:57:00] Posted data.
[09:57:00] Initial: 0000; - Receiving payload (expected size: 1142751)
[09:57:10] - Downloaded at ~111 kB/s
[09:57:10] - Averaged speed for that direction ~109 kB/s
[09:57:10] + Received work.
[09:57:10] + Closed connections
[09:57:10]
[09:57:10] + Processing work unit
[09:57:10] At least 4 processors must be requested.Core required: FahCore_a2.exe
[09:57:10] Core found.
[09:57:10] Working on queue slot 07 [August 27 09:57:10 UTC]
[09:57:10] + Working ...
[09:57:10] - Calling './mpiexec -np 4 -host 127.0.0.1 ./FahCore_a2.exe -dir work/ -suffix 07 -checkpoint 30 -forceasm -verbose -lifeline 4399 -version 624'
[09:57:10]
[09:57:10] *------------------------------*
[09:57:10] Folding@Home Gromacs SMP Core
[09:57:10] Version 2.08 (Mon May 18 14:47:42 PDT 2009)
[09:57:10]
[09:57:10] Preparing to commence simulation
[09:57:10] - Ensuring status. Please wait.
[09:57:19] - Assembly optimizations manually forced on.
[09:57:19] - Not checking prior termination.
[09:57:20] - Expanded 1142239 -> 17887233 (decompressed 1565.9 percent)
[09:57:20] Called DecompressByteArray: compressed_data_size=1142239 data_size=17887233, decompressed_data_size=17887233 diff=0
[09:57:20] - Digital signature verified
[09:57:20]
[09:57:20] Project: 2669 (Run 1, Clone 138, Gen 21)
[09:57:20]
[09:57:21] Assembly optimizations on if available.
[09:57:21] Entering M.D.
NNODES=4, MYRANK=0, HOSTNAME=ubuntu
NNODES=4, MYRANK=1, HOSTNAME=ubuntu
NNODES=4, MYRANK=2, HOSTNAME=ubuntu
NODEID=1 argc=22
NODEID=0 argc=22
NNODES=4, MYRANK=3, HOSTNAME=ubuntu
NODEID=2 argc=22
:-) G R O M A C S (-:
NODEID=3 argc=22
Groningen Machine for Chemical Simulation
:-) VERSION 4.0.99_development_20090425 (-:
Written by David van der Spoel, Erik Lindahl, Berk Hess, and others.
Copyright (c) 1991-2000, University of Groningen, The Netherlands.
Copyright (c) 2001-2008, The GROMACS development team,
check out http://www.gromacs.org for more information.
:-) mdrun (-:
Reading file work/wudata_07.tpr, VERSION 3.3.99_development_20070618 (single precision)
-------------------------------------------------------
Program mdrun, VERSION 4.0.99_development_20090425
Source code file: smalloc.c, line: 147
Fatal error:
Not enough memory. Failed to calloc 2773589135 elements of size 4 for block->index
(called from file tpxio.c, line 1180)
For more information and tips for trouble shooting please check the GROMACS Wiki at
http://wiki.gromacs.org/index.php/Errors
-------------------------------------------------------
Thanx for Using GROMACS - Have a Nice Day
: Cannot allocate memory
Error on node 0, will try to stop all the nodes
Halting parallel program mdrun on CPU 0 out of 4
gcq#0: Thanx for Using GROMACS - Have a Nice Day
[cli_0]: aborting job:
application called MPI_Abort(MPI_COMM_WORLD, -1) - process 0