Code: Select all
[18:51:36] + Processing work unit
[18:51:36] Core required: FahCore_a1.exe
[18:51:36] Core found.
[18:51:36] Working on Unit 01 [April 24 18:51:36]
[18:51:36] + Working ...
[18:51:36] - Calling 'mpiexec -channel auto -np 4 FahCore_a1.exe -dir work/ -suffix 01 -checkpoint 15 -forceasm -verbose -lifeline 3316 -version 591'
[18:51:37]
[18:51:37] *------------------------------*
[18:51:37] Folding@Home Gromacs SMP Core
[18:51:37] Version 1.74 (March 10, 2007)
[18:51:37]
[18:51:37] Preparing to commence simulation
[18:51:37] - Ensuring status. Please wait.
[18:51:54] - Assembly optimizations manually forced on.
[18:51:54] - Not checking prior termination.
[18:51:54] - Expanded 609631 -> 3257605 (decompressed 534.3 percent)
[18:51:54] - Starting from initial work packet
[18:51:54]
[18:51:54] Project: 3064 (Run 3, Clone 83, Gen 20)
[18:51:54]
[18:51:54] Assembly optimizations on if available.
[18:51:54] Entering M.D.
[18:51:54] ne 83, Gen 20)
[18:51:54]
[18:51:55] Assembly optimizations on if available.
[18:51:55] Entering M.D.
[18:52:01] xtra SSE boost OK.
[18:52:01] Writing local files
[18:52:01] Completed 0 out of 5000000 steps (0 percent)
[19:06:29] Writing local files
[19:06:29] Completed 50000 out of 5000000 steps (1 percent)
[19:21:28] Timered checkpoint triggered.
[19:21:43] Writing local files
[19:21:43] Completed 100000 out of 5000000 steps (2 percent)
[19:36:43] Timered checkpoint triggered.
[19:36:57] Writing local files
[19:36:57] Completed 150000 out of 5000000 steps (3 percent)
[19:51:57] Timered checkpoint triggered.
[19:52:13] Writing local files
[19:52:14] Completed 200000 out of 5000000 steps (4 percent)
[20:07:13] Timered checkpoint triggered.
[20:07:30] Writing local files
[20:07:30] Completed 250000 out of 5000000 steps (5 percent)
[20:19:29] Gromacs cannot continue further.
[20:19:29] Going to send back what have done.
[20:19:29] logfile size: 15580
[20:19:29] - Writing 16116 bytes of core data to disk...
[20:19:29] ... Done.
[20:19:29] - Failed to delete work/wudata_01.sas
[20:19:29] - Failed to delete work/wudata_01.goe
[20:19:29] - Failed to delete work/wudata_01.pdo
[20:19:29] Warning: check for stray files
[20:21:29]
[20:21:29] Folding@home Core Shutdown: EARLY_UNIT_END
[20:21:29]
[20:21:29] Folding@home Core Shutdown: EARLY_UNIT_END
[20:21:33] CoreStatus = 7B (123)
[20:21:33] Client-core communications error: ERROR 0x7b
[20:21:33] Deleting current work unit & continuing...
[20:23:53] - Warning: Could not delete all work unit files (1): Core returned invalid code
[20:23:53] Trying to send all finished work units
[20:23:53] + No unsent completed units remaining.
[20:23:53] - Preparing to get new work unit...
[20:23:53] + Attempting to get work packet
[20:23:53] - Will indicate memory of 2037 MB
[20:23:53] - Connecting to assignment server
[20:23:53] Connecting to http://assign.stanford.edu:8080/
[20:23:53] Posted data.
[20:23:53] Initial: 40AB; - Successful: assigned to (171.64.65.63).
[20:23:53] + News From Folding@Home: Welcome to Folding@Home
[20:23:54] Loaded queue successfully.
[20:23:54] Connecting to http://171.64.65.63:8080/
[20:23:55] Posted data.
[20:23:55] Initial: 0000; - Receiving payload (expected size: 610143)
[20:23:57] - Downloaded at ~297 kB/s
[20:23:57] - Averaged speed for that direction ~272 kB/s
[20:23:57] + Received work.
[20:23:57] + Closed connections
[20:24:02]
[20:24:02] + Processing work unit
[20:24:02] Core required: FahCore_a1.exe
[20:24:02] Core found.
[20:24:02] Working on Unit 02 [April 24 20:24:02]
[20:24:02] + Working ...
[20:24:02] - Calling 'mpiexec -channel auto -np 4 FahCore_a1.exe -dir work/ -suffix 02 -checkpoint 15 -forceasm -verbose -lifeline 3316 -version 591'
[20:24:02]
[20:24:02] *------------------------------*
[20:24:02] Folding@Home Gromacs SMP Core
[20:24:02] Version 1.74 (March 10, 2007)
[20:24:02]
[20:24:02] Preparing to commence simulation
[20:24:02] - Ensuring status. Please wait.
[20:24:19] - Assembly optimizations manually forced on.
[20:24:19] - Not checking prior termination.
[20:24:20] - Expanded 609631 -> 3257605 (decompressed 534.3 percent)
[20:24:20] - Starting from initial work packet
[20:24:20]
[20:24:20] Project: 3064 (Run 3, Clone 83, Gen 20)
[20:24:20]
[20:24:20] Assembly optimizations on if available.
[20:24:20] Entering M.D.
[20:24:26] Rejecting checkpoint
[20:24:26] ProteinWriting local files
[20:24:26] Extra SSE boost OK.
[20:24:26]
[20:24:26] Extra SSE boost OK.
[20:24:26] Writing local files
[20:24:26] Completed 0 out of 5000000 steps (0 percent)
[20:39:07] Writing local files
[20:39:07] Completed 50000 out of 5000000 steps (1 percent)
[20:54:08] Timered checkpoint triggered.
[20:54:23] Writing local files
[20:54:23] Completed 100000 out of 5000000 steps (2 percent)
[21:09:24] Timered checkpoint triggered.
[21:09:37] Writing local files
[21:09:37] Completed 150000 out of 5000000 steps (3 percent)
[21:24:38] Timered checkpoint triggered.
[21:24:53] Writing local files
[21:24:53] Completed 200000 out of 5000000 steps (4 percent)
[21:39:54] Timered checkpoint triggered.
[21:40:08] Writing local files
[21:40:08] Completed 250000 out of 5000000 steps (5 percent)
[21:52:07] Gromacs cannot continue further.
[21:52:07] Going to send back what have done.
[21:52:07] logfile size: 15579
[21:52:07] - Writing 16115 bytes of core data to disk...
[21:52:07] ... Done.
[21:52:07] - Failed to delete work/wudata_02.sas
[21:52:07] - Failed to delete work/wudata_02.goe
[21:52:07] - Failed to delete work/wudata_02.xvg
[21:52:07] Warning: check for stray files
[21:54:07]
[21:54:07] Folding@home Core Shutdown: EARLY_UNIT_END
[21:54:07]
[21:54:07] Folding@home Core Shutdown: EARLY_UNIT_END
[21:54:10] CoreStatus = 7B (123)
[21:54:10] Client-core communications error: ERROR 0x7b
[21:54:10] Deleting current work unit & continuing...
[21:56:30] - Warning: Could not delete all work unit files (2): Core returned invalid code
[21:56:30] Trying to send all finished work units
[21:56:30] + No unsent completed units remaining.
[21:56:30] - Preparing to get new work unit...
[21:56:30] + Attempting to get work packet
[21:56:30] - Will indicate memory of 2037 MB
[21:56:30] - Connecting to assignment server
[21:56:30] Connecting to http://assign.stanford.edu:8080/
[21:56:31] Posted data.
[21:56:31] Initial: 40AB; - Successful: assigned to (171.64.65.63).
[21:56:31] + News From Folding@Home: Welcome to Folding@Home
[21:56:31] Loaded queue successfully.
[21:56:31] Connecting to http://171.64.65.63:8080/
[21:56:32] Posted data.
[21:56:32] Initial: 0000; - Receiving payload (expected size: 610143)
[21:56:35] - Downloaded at ~198 kB/s
[21:56:35] - Averaged speed for that direction ~257 kB/s
[21:56:35] + Received work.
[21:56:35] + Closed connections
[21:56:40]
[21:56:40] + Processing work unit
[21:56:40] Core required: FahCore_a1.exe
[21:56:40] Core found.
[21:56:40] Working on Unit 03 [April 24 21:56:40]
[21:56:40] + Working ...
[21:56:40] - Calling 'mpiexec -channel auto -np 4 FahCore_a1.exe -dir work/ -suffix 03 -checkpoint 15 -forceasm -verbose -lifeline 3316 -version 591'
[21:56:40]
[21:56:40] *------------------------------*
[21:56:40] Folding@Home Gromacs SMP Core
[21:56:40] Version 1.74 (March 10, 2007)
[21:56:40]
[21:56:40] Preparing to commence simulation
[21:56:40] - Ensuring status. Please wait.
[21:56:57] - Assembly optimizations manually forced on.
[21:56:57] - Not checking prior termination.
[21:56:58] - Expanded 609631 -> 3257605 (decompressed 534.3 percent)
[21:56:58] - Starting from initial work packet
[21:56:58]
[21:56:58] Project: 3064 (Run 3, Clone 83, Gen 20)
[21:56:58]
[21:56:58] Assembly optimizations on if available.
[21:56:58] Entering M.D.
[21:56:58] ne 83, Gen 20)
[21:56:58]
[21:56:58] Assembly optimizations on if available.
[21:56:58] Entering M.D.
[21:57:04] xtra SSE boost OK.
[21:57:04] Writing local files
[21:57:04] Completed 0 out of 5000000 steps (0 percent)
[22:12:02] Writing local files
[22:12:02] Completed 50000 out of 5000000 steps (1 percent)
[22:27:03] Timered checkpoint triggered.
[22:27:19] Writing local files
[22:27:19] Completed 100000 out of 5000000 steps (2 percent)
[22:42:19] Timered checkpoint triggered.
[22:42:35] Writing local files
[22:42:35] Completed 150000 out of 5000000 steps (3 percent)
[22:57:35] Timered checkpoint triggered.
[22:57:51] Writing local files
[22:57:51] Completed 200000 out of 5000000 steps (4 percent)
[23:00:35] - Autosending finished units...
[23:00:35] Trying to send all finished work units
[23:00:35] + No unsent completed units remaining.
[23:00:35] - Autosend completed
[23:12:51] Timered checkpoint triggered.
[23:13:07] Writing local files
[23:13:07] Completed 250000 out of 5000000 steps (5 percent)
[23:25:06] Gromacs cannot continue further.
[23:25:06] Going to send back what have done.
[23:25:06] logfile size: 15580
[23:25:06] - Writing 16116 bytes of core data to disk...
[23:25:06] ... Done.
[23:25:06] - Failed to delete work/wudata_03.sas
[23:25:06] - Failed to delete work/wudata_03.goe
[23:25:06] Warning: check for stray files
[23:27:06]
[23:27:06] Folding@home Core Shutdown: EARLY_UNIT_END
[23:27:06]
[23:27:06] Folding@home Core Shutdown: EARLY_UNIT_END
[23:27:08] CoreStatus = 7B (123)
[23:27:08] Client-core communications error: ERROR 0x7b
[23:27:08] - Attempting to download new core...
[23:27:08] + Downloading new core: FahCore_a1.exe
[23:27:08] Downloading core (/~pande/Win32/x86//Core_a1.fah from www.stanford.edu)
[23:27:11] Initial: AFDE; + 10240 bytes downloaded
[23:27:11] Initial: AD21; + 20480 bytes downloaded
[23:27:11] Initial: CC38; + 30720 bytes downloaded
[23:27:11] Initial: 8501; + 40960 bytes downloaded
[23:27:11] Initial: F56A; + 51200 bytes downloaded
[23:27:11] Initial: ABAE; + 61440 bytes downloaded
[23:27:11] Initial: B6B0; + 71680 bytes downloaded
[23:27:11] Initial: 783A; + 81920 bytes downloaded
[23:27:11] Initial: B2A6; + 92160 bytes downloaded
[23:27:11] Initial: 1409; + 102400 bytes downloaded
[23:27:11] Initial: BBF0; + 112640 bytes downloaded
[23:27:11] Initial: 1861; + 122880 bytes downloaded
[23:27:12] Initial: 5950; + 133120 bytes downloaded
[23:27:12] Initial: 1081; + 143360 bytes downloaded
[23:27:12] Initial: 26BC; + 153600 bytes downloaded
[23:27:12] Initial: FE4A; + 163840 bytes downloaded
[23:27:12] Initial: C1C3; + 174080 bytes downloaded
[23:27:12] Initial: 9B49; + 184320 bytes downloaded
[23:27:12] Initial: 9EE5; + 194560 bytes downloaded
[23:27:12] Initial: D79D; + 204800 bytes downloaded
[23:27:12] Initial: 7801; + 215040 bytes downloaded
[23:27:12] Initial: 8B51; + 225280 bytes downloaded
[23:27:12] Initial: E26E; + 235520 bytes downloaded
[23:27:12] Initial: EDB0; + 245760 bytes downloaded
[23:27:12] Initial: 0919; + 256000 bytes downloaded
[23:27:12] Initial: CDDE; + 266240 bytes downloaded
[23:27:12] Initial: 7A7E; + 276480 bytes downloaded
[23:27:12] Initial: 034E; + 286720 bytes downloaded
[23:27:12] Initial: 88D0; + 296960 bytes downloaded
[23:27:12] Initial: D66D; + 307200 bytes downloaded
[23:27:12] Initial: 6A52; + 317440 bytes downloaded
[23:27:12] Initial: B478; + 327680 bytes downloaded
[23:27:12] Initial: CF8A; + 337920 bytes downloaded
[23:27:12] Initial: 8407; + 348160 bytes downloaded
[23:27:12] Initial: 2246; + 358400 bytes downloaded
[23:27:12] Initial: 1C69; + 368640 bytes downloaded
[23:27:12] Initial: 1287; + 378880 bytes downloaded
[23:27:12] Initial: 19B3; + 389120 bytes downloaded
[23:27:12] Initial: 1AD1; + 399360 bytes downloaded
[23:27:12] Initial: 5791; + 409600 bytes downloaded
[23:27:12] Initial: 76C5; + 419840 bytes downloaded
[23:27:12] Initial: 9B77; + 430080 bytes downloaded
[23:27:12] Initial: E82F; + 440320 bytes downloaded
[23:27:12] Initial: D0D3; + 450560 bytes downloaded
[23:27:12] Initial: 0F5E; + 460800 bytes downloaded
[23:27:12] Initial: D743; + 471040 bytes downloaded
[23:27:12] Initial: 0B7C; + 481280 bytes downloaded
[23:27:12] Initial: FAFD; + 491520 bytes downloaded
[23:27:12] Initial: 0E14; + 501760 bytes downloaded
[23:27:12] Initial: 4048; + 512000 bytes downloaded
[23:27:13] Initial: 21A5; + 522240 bytes downloaded
[23:27:13] Initial: C1A5; + 532480 bytes downloaded
[23:27:13] Initial: F716; + 542720 bytes downloaded
[23:27:13] Initial: DD98; + 552960 bytes downloaded
[23:27:13] Initial: 9F7B; + 563200 bytes downloaded
[23:27:13] Initial: 1CC0; + 573440 bytes downloaded
[23:27:13] Initial: 4D37; + 583680 bytes downloaded
[23:27:13] Initial: 222A; + 593920 bytes downloaded
[23:27:13] Initial: 8E33; + 604160 bytes downloaded
[23:27:13] Initial: D3C9; + 614400 bytes downloaded
[23:27:13] Initial: 9821; + 624640 bytes downloaded
[23:27:13] Initial: 236E; + 634880 bytes downloaded
[23:27:13] Initial: 1A7A; + 645120 bytes downloaded
[23:27:13] Initial: 6D64; + 655360 bytes downloaded
[23:27:13] Initial: 4ADC; + 665600 bytes downloaded
[23:27:13] Initial: 3854; + 675840 bytes downloaded
[23:27:13] Initial: CB5C; + 686080 bytes downloaded
[23:27:13] Initial: 2A88; + 696320 bytes downloaded
[23:27:13] Initial: 1199; + 706560 bytes downloaded
[23:27:13] Initial: 0512; + 716800 bytes downloaded
[23:27:13] Initial: 316E; + 727040 bytes downloaded
[23:27:13] Initial: D89D; + 737280 bytes downloaded
[23:27:13] Initial: E6A3; + 747520 bytes downloaded
[23:27:13] Initial: B488; + 757760 bytes downloaded
[23:27:13] Initial: BAFD; + 768000 bytes downloaded
[23:27:13] Initial: 34A0; + 778240 bytes downloaded
[23:27:14] Initial: DD6C; + 788480 bytes downloaded
[23:27:14] Initial: D2E9; + 789667 bytes downloaded
[23:27:14] Verifying core Core_a1.fah...
[23:27:14] Signature is VALID
[23:27:14]
[23:27:14] Trying to unzip core FahCore_a1.exe
[23:27:14] Decompressed FahCore_a1.exe (2035712 bytes) successfully
[23:27:14] + Core successfully engaged
[23:27:14] Deleting current work unit & continuing...
[23:29:34] - Warning: Could not delete all work unit files (3): Core returned invalid code
[23:29:34] Trying to send all finished work units
[23:29:34] + No unsent completed units remaining.
[23:29:34] - Preparing to get new work unit...
[23:29:34] + Attempting to get work packet
[23:29:34] - Will indicate memory of 2037 MB
[23:29:34] - Connecting to assignment server
[23:29:34] Connecting to http://assign.stanford.edu:8080/
[23:29:43] Posted data.
[23:29:43] Initial: 40AB; - Successful: assigned to (171.64.65.63).
[23:29:43] + News From Folding@Home: Welcome to Folding@Home
[23:29:44] Loaded queue successfully.
[23:29:44] Connecting to http://171.64.65.63:8080/
[23:29:44] Posted data.
[23:29:44] Initial: 0000; - Error: Bad packet type from server, expected work assignment
[23:29:44] - Error: Attempt #1 to get work failed, and no other work to do.
Waiting before retry.
[23:30:02] + Attempting to get work packet
[23:30:02] - Will indicate memory of 2037 MB
[23:30:02] - Connecting to assignment server
[23:30:02] Connecting to http://assign.stanford.edu:8080/
[23:30:06] Posted data.