Here is the relevant section from the log:
Code: Select all
23/11/12:08:17:16:WU01:FS00:Connecting to assign3.stanford.edu:8080
23/11/12:08:17:17:WU01:FS00:News: Welcome to Folding@Home
23/11/12:08:17:17:WU01:FS00:Assigned to work server 171.64.65.104
23/11/12:08:17:17:WU01:FS00:Requesting new work unit for slot 00: RUNNING smp:4 from 171.64.65.104
23/11/12:08:17:17:WU01:FS00:Connecting to 171.64.65.104:8080
23/11/12:08:17:18:WU01:FS00:Downloading 29.65KiB
23/11/12:08:17:18:WU01:FS00:Download complete
23/11/12:08:17:18:WU01:FS00:Received Unit: id:01 state:DOWNLOAD error:OK project:7611 run:1 clone:0 gen:294 core:0xa4 unit:0x00000185664f2dd04df0f4fbabb702b0
23/11/12:08:17:18:WU01:FS00:Downloading project 7611 description
23/11/12:08:17:18:WU01:FS00:Connecting to fah-web.stanford.edu:80
23/11/12:08:17:19:WU01:FS00:Project 7611 description downloaded successfully
23/11/12:08:17:46:WU01:FS00:Starting
23/11/12:08:17:46:WU01:FS00:Running FahCore: /home/folder/FAHCoreWrapper /home/folder/cores/www.stanford.edu/~pande/Linux/AMD64/Core_a4.fah/FahCore_a4 -dir 01 -suffix 01 -version 701 -lifeline 14985 -checkpoint 15 -np 4 -forceasm
23/11/12:08:17:46:WU01:FS00:Started FahCore on PID 8393
23/11/12:08:17:46:Started thread 128 on PID 14985
23/11/12:08:17:46:WU01:FS00:Core PID:8397
23/11/12:08:17:46:WU01:FS00:FahCore 0xa4 started
23/11/12:08:17:47:WU01:FS00:0xa4:
23/11/12:08:17:47:WU01:FS00:0xa4:*------------------------------*
23/11/12:08:17:47:WU01:FS00:0xa4:Folding@Home Gromacs GB Core
23/11/12:08:17:47:WU01:FS00:0xa4:Version 2.27 (Dec. 15, 2010)
23/11/12:08:17:47:WU01:FS00:0xa4:
23/11/12:08:17:47:WU01:FS00:0xa4:Preparing to commence simulation
23/11/12:08:17:47:WU01:FS00:0xa4:- Assembly optimizations manually forced on.
23/11/12:08:17:47:WU01:FS00:0xa4:- Not checking prior termination.
23/11/12:08:17:47:WU01:FS00:0xa4:- Expanded 29850 -> 644556 (decompressed 2159.3 percent)
23/11/12:08:17:47:WU01:FS00:0xa4:Called DecompressByteArray: compressed_data_size=29850 data_size=644556, decompressed_data_size=644556 diff=0
23/11/12:08:17:47:WU01:FS00:0xa4:- Digital signature verified
23/11/12:08:17:47:WU01:FS00:0xa4:
23/11/12:08:17:47:WU01:FS00:0xa4:Project: 7611 (Run 1, Clone 0, Gen 294)
23/11/12:08:17:47:WU01:FS00:0xa4:
23/11/12:08:17:47:WU01:FS00:0xa4:Assembly optimizations on if available.
23/11/12:08:17:47:WU01:FS00:0xa4:Entering M.D.
23/11/12:08:17:53:WU01:FS00:FahCore returned: INTERRUPTED (102 = 0x66)
23/11/12:08:17:53:WU01:FS00:Starting
23/11/12:08:17:53:WU01:FS00:Running FahCore: /home/folder/FAHCoreWrapper /home/folder/cores/www.stanford.edu/~pande/Linux/AMD64/Core_a4.fah/FahCore_a4 -dir 01 -suffix 01 -version 701 -lifeline 14985 -checkpoint 15 -np 4 -forceasm
23/11/12:08:17:53:WU01:FS00:Started FahCore on PID 8404
23/11/12:08:17:53:Started thread 129 on PID 14985
23/11/12:08:17:53:WU01:FS00:Core PID:8408
23/11/12:08:17:53:WU01:FS00:FahCore 0xa4 started
23/11/12:08:17:53:WU01:FS00:0xa4:
23/11/12:08:17:53:WU01:FS00:0xa4:*------------------------------*
23/11/12:08:17:53:WU01:FS00:0xa4:Folding@Home Gromacs GB Core
23/11/12:08:17:53:WU01:FS00:0xa4:Version 2.27 (Dec. 15, 2010)
23/11/12:08:17:53:WU01:FS00:0xa4:
23/11/12:08:17:53:WU01:FS00:0xa4:Preparing to commence simulation
23/11/12:08:17:53:WU01:FS00:0xa4:- Ensuring status. Please wait.
23/11/12:08:18:02:WU01:FS00:0xa4:- Assembly optimizations manually forced on.
23/11/12:08:18:02:WU01:FS00:0xa4:- Not checking prior termination.
23/11/12:08:18:03:WU01:FS00:0xa4:- Expanded 29850 -> 644556 (decompressed 2159.3 percent)
23/11/12:08:18:03:WU01:FS00:0xa4:Called DecompressByteArray: compressed_data_size=29850 data_size=644556, decompressed_data_size=644556 diff=0
23/11/12:08:18:03:WU01:FS00:0xa4:- Digital signature verified
23/11/12:08:18:03:WU01:FS00:0xa4:
23/11/12:08:18:03:WU01:FS00:0xa4:Project: 7611 (Run 1, Clone 0, Gen 294)
23/11/12:08:18:03:WU01:FS00:0xa4:
23/11/12:08:18:03:WU01:FS00:0xa4:Assembly optimizations on if available.
23/11/12:08:18:03:WU01:FS00:0xa4:Entering M.D.
23/11/12:08:18:09:WU01:FS00:FahCore returned: INTERRUPTED (102 = 0x66)
23/11/12:08:18:53:WU01:FS00:Starting
23/11/12:08:18:53:WU01:FS00:Running FahCore: /home/folder/FAHCoreWrapper /home/folder/cores/www.stanford.edu/~pande/Linux/AMD64/Core_a4.fah/FahCore_a4 -dir 01 -suffix 01 -version 701 -lifeline 14985 -checkpoint 15 -np 4 -forceasm
23/11/12:08:18:53:WU01:FS00:Started FahCore on PID 8420
23/11/12:08:18:53:Started thread 130 on PID 14985
23/11/12:08:18:53:WU01:FS00:Core PID:8424
23/11/12:08:18:53:WU01:FS00:FahCore 0xa4 started
23/11/12:08:18:53:WU01:FS00:0xa4:
23/11/12:08:18:53:WU01:FS00:0xa4:*------------------------------*
23/11/12:08:18:53:WU01:FS00:0xa4:Folding@Home Gromacs GB Core
23/11/12:08:18:53:WU01:FS00:0xa4:Version 2.27 (Dec. 15, 2010)
23/11/12:08:18:53:WU01:FS00:0xa4:
23/11/12:08:18:53:WU01:FS00:0xa4:Preparing to commence simulation
23/11/12:08:18:53:WU01:FS00:0xa4:- Ensuring status. Please wait.
23/11/12:08:19:03:WU01:FS00:0xa4:- Assembly optimizations manually forced on.
23/11/12:08:19:03:WU01:FS00:0xa4:- Not checking prior termination.
23/11/12:08:19:03:WU01:FS00:0xa4:- Expanded 29850 -> 644556 (decompressed 2159.3 percent)
23/11/12:08:19:03:WU01:FS00:0xa4:Called DecompressByteArray: compressed_data_size=29850 data_size=644556, decompressed_data_size=644556 diff=0
23/11/12:08:19:03:WU01:FS00:0xa4:- Digital signature verified
23/11/12:08:19:03:WU01:FS00:0xa4:
23/11/12:08:19:03:WU01:FS00:0xa4:Project: 7611 (Run 1, Clone 0, Gen 294)
23/11/12:08:19:03:WU01:FS00:0xa4:
23/11/12:08:19:03:WU01:FS00:0xa4:Assembly optimizations on if available.
23/11/12:08:19:03:WU01:FS00:0xa4:Entering M.D.
23/11/12:08:19:09:WU01:FS00:FahCore returned: INTERRUPTED (102 = 0x66)
23/11/12:08:20:30:WU01:FS00:Starting
23/11/12:08:20:30:WU01:FS00:Running FahCore: /home/folder/FAHCoreWrapper /home/folder/cores/www.stanford.edu/~pande/Linux/AMD64/Core_a4.fah/FahCore_a4 -dir 01 -suffix 01 -version 701 -lifeline 14985 -checkpoint 15 -np 4 -forceasm
23/11/12:08:20:30:WU01:FS00:Started FahCore on PID 8451
23/11/12:08:20:30:Started thread 131 on PID 14985
23/11/12:08:20:30:WU01:FS00:Core PID:8455
23/11/12:08:20:30:WU01:FS00:FahCore 0xa4 started
23/11/12:08:20:31:WU01:FS00:0xa4:
23/11/12:08:20:31:WU01:FS00:0xa4:*------------------------------*
23/11/12:08:20:31:WU01:FS00:0xa4:Folding@Home Gromacs GB Core
23/11/12:08:20:31:WU01:FS00:0xa4:Version 2.27 (Dec. 15, 2010)
23/11/12:08:20:31:WU01:FS00:0xa4:
23/11/12:08:20:31:WU01:FS00:0xa4:Preparing to commence simulation
23/11/12:08:20:31:WU01:FS00:0xa4:- Ensuring status. Please wait.
23/11/12:08:20:40:WU01:FS00:0xa4:- Assembly optimizations manually forced on.
23/11/12:08:20:40:WU01:FS00:0xa4:- Not checking prior termination.
23/11/12:08:20:40:WU01:FS00:0xa4:- Expanded 29850 -> 644556 (decompressed 2159.3 percent)
23/11/12:08:20:40:WU01:FS00:0xa4:Called DecompressByteArray: compressed_data_size=29850 data_size=644556, decompressed_data_size=644556 diff=0
23/11/12:08:20:40:WU01:FS00:0xa4:- Digital signature verified
23/11/12:08:20:40:WU01:FS00:0xa4:
23/11/12:08:20:40:WU01:FS00:0xa4:Project: 7611 (Run 1, Clone 0, Gen 294)
23/11/12:08:20:40:WU01:FS00:0xa4:
23/11/12:08:20:40:WU01:FS00:0xa4:Assembly optimizations on if available.
23/11/12:08:20:40:WU01:FS00:0xa4:Entering M.D.
23/11/12:08:20:46:WU01:FS00:FahCore returned: INTERRUPTED (102 = 0x66)
23/11/12:08:23:07:WU01:FS00:Starting
23/11/12:08:23:07:WU01:FS00:Running FahCore: /home/folder/FAHCoreWrapper /home/folder/cores/www.stanford.edu/~pande/Linux/AMD64/Core_a4.fah/FahCore_a4 -dir 01 -suffix 01 -version 701 -lifeline 14985 -checkpoint 15 -np 4 -forceasm
23/11/12:08:23:08:WU01:FS00:Started FahCore on PID 8474
23/11/12:08:23:08:Started thread 132 on PID 14985
23/11/12:08:23:08:WU01:FS00:Core PID:8478
23/11/12:08:23:08:WU01:FS00:FahCore 0xa4 started
23/11/12:08:23:08:WU01:FS00:0xa4:
23/11/12:08:23:08:WU01:FS00:0xa4:*------------------------------*
23/11/12:08:23:08:WU01:FS00:0xa4:Folding@Home Gromacs GB Core
23/11/12:08:23:08:WU01:FS00:0xa4:Version 2.27 (Dec. 15, 2010)
23/11/12:08:23:08:WU01:FS00:0xa4:
23/11/12:08:23:08:WU01:FS00:0xa4:Preparing to commence simulation
23/11/12:08:23:08:WU01:FS00:0xa4:- Ensuring status. Please wait.
23/11/12:08:23:17:WU01:FS00:0xa4:- Assembly optimizations manually forced on.
23/11/12:08:23:17:WU01:FS00:0xa4:- Not checking prior termination.
23/11/12:08:23:17:WU01:FS00:0xa4:- Expanded 29850 -> 644556 (decompressed 2159.3 percent)
23/11/12:08:23:17:WU01:FS00:0xa4:Called DecompressByteArray: compressed_data_size=29850 data_size=644556, decompressed_data_size=644556 diff=0
23/11/12:08:23:17:WU01:FS00:0xa4:- Digital signature verified
23/11/12:08:23:17:WU01:FS00:0xa4:
23/11/12:08:23:17:WU01:FS00:0xa4:Project: 7611 (Run 1, Clone 0, Gen 294)
23/11/12:08:23:17:WU01:FS00:0xa4:
23/11/12:08:23:17:WU01:FS00:0xa4:Assembly optimizations on if available.
23/11/12:08:23:17:WU01:FS00:0xa4:Entering M.D.
23/11/12:08:23:24:WU01:FS00:FahCore returned: INTERRUPTED (102 = 0x66)
23/11/12:08:27:22:WU01:FS00:Starting
23/11/12:08:27:22:WU01:FS00:Running FahCore: /home/folder/FAHCoreWrapper /home/folder/cores/www.stanford.edu/~pande/Linux/AMD64/Core_a4.fah/FahCore_a4 -dir 01 -suffix 01 -version 701 -lifeline 14985 -checkpoint 15 -np 4 -forceasm
23/11/12:08:27:22:WU01:FS00:Started FahCore on PID 8514
23/11/12:08:27:22:Started thread 133 on PID 14985
23/11/12:08:27:22:WU01:FS00:Core PID:8518
23/11/12:08:27:22:WU01:FS00:FahCore 0xa4 started
23/11/12:08:27:22:WU01:FS00:0xa4:
23/11/12:08:27:22:WU01:FS00:0xa4:*------------------------------*
23/11/12:08:27:22:WU01:FS00:0xa4:Folding@Home Gromacs GB Core
23/11/12:08:27:22:WU01:FS00:0xa4:Version 2.27 (Dec. 15, 2010)
23/11/12:08:27:22:WU01:FS00:0xa4:
23/11/12:08:27:22:WU01:FS00:0xa4:Preparing to commence simulation
23/11/12:08:27:22:WU01:FS00:0xa4:- Ensuring status. Please wait.
23/11/12:08:27:32:WU01:FS00:0xa4:- Assembly optimizations manually forced on.
23/11/12:08:27:32:WU01:FS00:0xa4:- Not checking prior termination.
23/11/12:08:27:32:WU01:FS00:0xa4:- Expanded 29850 -> 644556 (decompressed 2159.3 percent)
23/11/12:08:27:32:WU01:FS00:0xa4:Called DecompressByteArray: compressed_data_size=29850 data_size=644556, decompressed_data_size=644556 diff=0
23/11/12:08:27:32:WU01:FS00:0xa4:- Digital signature verified
23/11/12:08:27:32:WU01:FS00:0xa4:
23/11/12:08:27:32:WU01:FS00:0xa4:Project: 7611 (Run 1, Clone 0, Gen 294)
23/11/12:08:27:32:WU01:FS00:0xa4:
23/11/12:08:27:32:WU01:FS00:0xa4:Assembly optimizations on if available.
23/11/12:08:27:32:WU01:FS00:0xa4:Entering M.D.
23/11/12:08:27:38:WU01:FS00:FahCore returned: INTERRUPTED (102 = 0x66)
23/11/12:08:34:13:WU01:FS00:Starting
23/11/12:08:34:13:WU01:FS00:Running FahCore: /home/folder/FAHCoreWrapper /home/folder/cores/www.stanford.edu/~pande/Linux/AMD64/Core_a4.fah/FahCore_a4 -dir 01 -suffix 01 -version 701 -lifeline 14985 -checkpoint 15 -np 4 -forceasm
23/11/12:08:34:13:WU01:FS00:Started FahCore on PID 8572
23/11/12:08:34:13:Started thread 134 on PID 14985
23/11/12:08:34:13:WU01:FS00:Core PID:8576
23/11/12:08:34:13:WU01:FS00:FahCore 0xa4 started
23/11/12:08:34:14:WU01:FS00:0xa4:
23/11/12:08:34:14:WU01:FS00:0xa4:*------------------------------*
23/11/12:08:34:14:WU01:FS00:0xa4:Folding@Home Gromacs GB Core
23/11/12:08:34:14:WU01:FS00:0xa4:Version 2.27 (Dec. 15, 2010)
23/11/12:08:34:14:WU01:FS00:0xa4:
23/11/12:08:34:14:WU01:FS00:0xa4:Preparing to commence simulation
23/11/12:08:34:14:WU01:FS00:0xa4:- Ensuring status. Please wait.
23/11/12:08:34:23:WU01:FS00:0xa4:- Assembly optimizations manually forced on.
23/11/12:08:34:23:WU01:FS00:0xa4:- Not checking prior termination.
23/11/12:08:34:23:WU01:FS00:0xa4:- Expanded 29850 -> 644556 (decompressed 2159.3 percent)
23/11/12:08:34:23:WU01:FS00:0xa4:Called DecompressByteArray: compressed_data_size=29850 data_size=644556, decompressed_data_size=644556 diff=0
23/11/12:08:34:23:WU01:FS00:0xa4:- Digital signature verified
23/11/12:08:34:23:WU01:FS00:0xa4:
23/11/12:08:34:23:WU01:FS00:0xa4:Project: 7611 (Run 1, Clone 0, Gen 294)
23/11/12:08:34:23:WU01:FS00:0xa4:
23/11/12:08:34:23:WU01:FS00:0xa4:Assembly optimizations on if available.
23/11/12:08:34:23:WU01:FS00:0xa4:Entering M.D.
23/11/12:08:34:29:WU01:FS00:FahCore returned: INTERRUPTED (102 = 0x66)
23/11/12:08:44:15:WARNING:Caught signal SIGINT(2) on PID 14985
23/11/12:08:44:15:Exiting, please wait. . .
23/11/12:08:44:16:Clean exit
Code: Select all
23/11/12:08:56:34:WU01:FS00:Starting
23/11/12:08:56:34:WU01:FS00:Running FahCore: /home/folder/FAHCoreWrapper /home/folder/cores/www.stanford.edu/~pande/Linux/AMD64/Core_a4.fah/FahCore_a4 -dir 01 -suffix 01 -version 701 -lifeline 8780 -checkpoint 15 -np 4
23/11/12:08:56:34:WU01:FS00:Started FahCore on PID 8788
23/11/12:08:56:34:WU01:FS00:Core PID:8792
23/11/12:08:56:34:WU01:FS00:FahCore 0xa4 started
23/11/12:08:56:34:WU01:FS00:0xa4:
23/11/12:08:56:34:WU01:FS00:0xa4:*------------------------------*
23/11/12:08:56:34:WU01:FS00:0xa4:Folding@Home Gromacs GB Core
23/11/12:08:56:34:WU01:FS00:0xa4:Version 2.27 (Dec. 15, 2010)
23/11/12:08:56:34:WU01:FS00:0xa4:
23/11/12:08:56:34:WU01:FS00:0xa4:Preparing to commence simulation
23/11/12:08:56:34:WU01:FS00:0xa4:- Ensuring status. Please wait.
23/11/12:08:56:44:WU01:FS00:0xa4:- Looking at optimizations...
23/11/12:08:56:44:WU01:FS00:0xa4:- Working with standard loops on this execution.
23/11/12:08:56:51:WU01:FS00:0xa4:- Created dyn
23/11/12:08:56:51:WU01:FS00:0xa4:- Files status OK
23/11/12:08:56:51:WU01:FS00:0xa4:- Expanded 29850 -> 644556 (decompressed 2159.3 percent)
23/11/12:08:56:51:WU01:FS00:0xa4:Called DecompressByteArray: compressed_data_size=29850 data_size=644556, decompressed_data_size=644556 diff=0
23/11/12:08:56:51:WU01:FS00:0xa4:- Digital signature verified
23/11/12:08:56:51:WU01:FS00:0xa4:
23/11/12:08:56:51:WU01:FS00:0xa4:Project: 7611 (Run 1, Clone 0, Gen 294)
23/11/12:08:56:51:WU01:FS00:0xa4:
23/11/12:08:56:51:WU01:FS00:0xa4:Entering M.D.
23/11/12:08:56:57:WU01:FS00:FahCore returned: INTERRUPTED (102 = 0x66)
23/11/12:08:56:57:WU01:FS00:Starting
23/11/12:08:56:57:WU01:FS00:Running FahCore: /home/folder/FAHCoreWrapper /home/folder/cores/www.stanford.edu/~pande/Linux/AMD64/Core_a4.fah/FahCore_a4 -dir 01 -suffix 01 -version 701 -lifeline 8780 -checkpoint 15 -np 4
23/11/12:08:56:57:WU01:FS00:Started FahCore on PID 8801
23/11/12:08:56:57:WU01:FS00:Core PID:8805
23/11/12:08:56:57:WU01:FS00:FahCore 0xa4 started
23/11/12:08:56:58:WU01:FS00:0xa4:
23/11/12:08:56:58:WU01:FS00:0xa4:*------------------------------*
23/11/12:08:56:58:WU01:FS00:0xa4:Folding@Home Gromacs GB Core
23/11/12:08:56:58:WU01:FS00:0xa4:Version 2.27 (Dec. 15, 2010)
23/11/12:08:56:58:WU01:FS00:0xa4:
23/11/12:08:56:58:WU01:FS00:0xa4:Preparing to commence simulation
23/11/12:08:56:58:WU01:FS00:0xa4:- Ensuring status. Please wait.
23/11/12:08:57:07:WU01:FS00:0xa4:- Looking at optimizations...
23/11/12:08:57:07:WU01:FS00:0xa4:- Working with standard loops on this execution.
23/11/12:08:57:07:WU01:FS00:0xa4:- Previous termination of core was improper.
23/11/12:08:57:07:WU01:FS00:0xa4:- Files status OK
23/11/12:08:57:07:WU01:FS00:0xa4:- Expanded 29850 -> 644556 (decompressed 2159.3 percent)
23/11/12:08:57:07:WU01:FS00:0xa4:Called DecompressByteArray: compressed_data_size=29850 data_size=644556, decompressed_data_size=644556 diff=0
23/11/12:08:57:07:WU01:FS00:0xa4:- Digital signature verified
23/11/12:08:57:07:WU01:FS00:0xa4:
23/11/12:08:57:07:WU01:FS00:0xa4:Project: 7611 (Run 1, Clone 0, Gen 294)
23/11/12:08:57:07:WU01:FS00:0xa4:
23/11/12:08:57:07:WU01:FS00:0xa4:Entering M.D.
23/11/12:08:57:13:WU01:FS00:FahCore returned: INTERRUPTED (102 = 0x66)
Code: Select all
[12741583.086434] FahCore_a4[8398]: segfault at 7f4fdc0d1d30 ip 00000000004aaf36 sp 00007f51ee1853a8 error 4 in FahCore_a4[400000+5e9000]
[12741599.250069] FahCore_a4[8410]: segfault at 7f1a140912c0 ip 00000000004aaf36 sp 00007f1c2167b3a8 error 4 in FahCore_a4[400000+5e9000]
[12741659.221647] FahCore_a4[8426]: segfault at 7fe2480d6910 ip 00000000004aaf36 sp 00007fe459a133a8 error 4 in FahCore_a4[400000+5e9000]
[12741756.462775] FahCore_a4[8457]: segfault at fffffffe023bfa40 ip 00000000004aaf36 sp 00007ffa3810c3a8 error 4 in FahCore_a4[400000+5e9000]
[12741913.694341] FahCore_a4[8479]: segfault at 7f643c0d2130 ip 00000000004aaf36 sp 00007f664c6ce3a8 error 4 in FahCore_a4[400000+5e9000]
[12742167.910641] FahCore_a4[8520]: segfault at 7f9d1c0ec520 ip 00000000004aaf36 sp 00007f9f2cc693a8 error 4 in FahCore_a4[400000+5e9000]
[12742579.109308] FahCore_a4[8584]: segfault at 7efd000b21f0 ip 00000000004aaf36 sp 00007eff0c1bb3a8 error 4 in FahCore_a4[400000+5e9000]
[12743926.744753] FahCore_a4[8794]: segfault at 7fd8d40f8260 ip 00000000004aaf36 sp 00007fdade33f3a8 error 4 in FahCore_a4[400000+5e9000]
[12743942.740007] FahCore_a4[8806]: segfault at fffffffe01169870 ip 00000000004aaf36 sp 00007f2e02f763a8 error 4 in FahCore_a4[400000+5e9000]