I think the frame0.tpr work file is corrupted.
getting different kinds of errors:
ERROR:wrong string length 0 for string buf (source /host/debian-stable-64bit-core-a7-avx-release/gromacs-core/build/gromacs/src/gromacs/fileio/tpxio.c, line 3206)
Unknown precision in file frame0.tpr: real is 549316104 bytes instead of 4 or 8
reading tpx file (frame0.tpr) version 549316480 with version 100 program
Can not read file frame0.tpr,
this file is from a Gromacs version which is older than 2.0
Make a new one with grompp or use a gro or pdb file, if possible
symtab get_symtab_handle 35184 not found
LOG:
Code: Select all
*********************** Log Started 2020-03-19T07:16:01Z ***********************
07:16:01:************************* Folding@home Client *************************
07:16:01: Website: https://foldingathome.org/
07:16:01: Copyright: (c) 2009-2018 foldingathome.org
07:16:01: Author: Joseph Coffland <joseph@cauldrondevelopment.com>
07:16:01: Args:
07:16:01: Config: /home/anon/config.xml
07:16:01:******************************** Build ********************************
07:16:01: Version: 7.5.1
07:16:01: Date: May 11 2018
07:16:01: Time: 19:59:04
07:16:01: Repository: Git
07:16:01: Revision: 4705bf53c635f88b8fe85af7675557e15d491ff0
07:16:01: Branch: master
07:16:01: Compiler: GNU 6.3.0 20170516
07:16:01: Options: -std=gnu++98 -O3 -funroll-loops
07:16:01: Platform: linux2 4.14.0-3-amd64
07:16:01: Bits: 64
07:16:01: Mode: Release
07:16:01:******************************* System ********************************
07:16:01: CPU: AMD Ryzen 7 3700X 8-Core Processor
07:16:01: CPU ID: AuthenticAMD Family 23 Model 113 Stepping 0
07:16:01: CPUs: 16
07:16:01: Memory: 31.37GiB
07:16:01: Free Memory: 1.15GiB
07:16:01: Threads: POSIX_THREADS
07:16:01: OS Version: 5.3
07:16:01: Has Battery: false
07:16:01: On Battery: false
07:16:01: UTC Offset: 1
07:16:01: PID: 22968
07:16:01: CWD: /home/anon
07:16:01: OS: Linux 5.3.0-42-generic x86_64
07:16:01: OS Arch: AMD64
07:16:01: GPUs: 1
07:16:01: GPU 0: Bus:11 Slot:0 Func:0 AMD:6 Navi 10 [Radeon RX 5600 OEM/5600 XT
07:16:01: / 5700/5700 XT]
07:16:01: CUDA: Not detected: Failed to open dynamic library 'libcuda.so':
07:16:01: libcuda.so: cannot open shared object file: No such file or
07:16:01: directory
07:16:01:OpenCL Device 0: Platform:0 Device:0 Bus:NA Slot:NA Compute:1.1 Driver:19.2
07:16:01:***********************************************************************
07:16:01:<config>
07:16:01: <!-- Network -->
07:16:01: <proxy v=':8080'/>
07:16:01:
07:16:01: <!-- Slot Control -->
07:16:01: <power v='full'/>
07:16:01:
07:16:01: <!-- User Information -->
07:16:01: <passkey v='********************************'/>
07:16:01: <team v='243320'/>
07:16:01: <user v='VulkanLogic'/>
07:16:01:
07:16:01: <!-- Folding Slots -->
07:16:01: <slot id='0' type='CPU'/>
07:16:01:</config>
07:16:01:Trying to access database...
07:16:01:Successfully acquired database lock
07:16:01:Enabled folding slot 00: READY cpu:16
07:16:01:WU01:FS00:Starting
07:16:01:WARNING:WU01:FS00:Changed SMP threads from 15 to 16 this can cause some work units to fail
07:16:01:WARNING:WU01:FS00:AS lowered CPUs from 16 to 15
07:16:01:WU01:FS00:Removing old file './work/01/logfile_01-20200319-064348.txt'
07:16:01:WU01:FS00:Running FahCore: /usr/bin/FAHCoreWrapper /home/anon/cores/cores.foldingathome.org/v7/lin/64bit/avx/Core_a7.fah/FahCore_a7 -dir 01 -suffix 01 -version 705 -lifeline 22968 -checkpoint 15 -np 15
07:16:01:WU01:FS00:Started FahCore on PID 23012
07:16:01:WU01:FS00:Core PID:23016
07:16:01:WU01:FS00:FahCore 0xa7 started
07:16:01:WU01:FS00:0xa7:*********************** Log Started 2020-03-19T07:16:01Z ***********************
07:16:01:WU01:FS00:0xa7:************************** Gromacs Folding@home Core ***************************
07:16:01:WU01:FS00:0xa7: Type: 0xa7
07:16:01:WU01:FS00:0xa7: Core: Gromacs
07:16:01:WU01:FS00:0xa7: Args: -dir 01 -suffix 01 -version 705 -lifeline 23012 -checkpoint 15 -np
07:16:01:WU01:FS00:0xa7: 15
07:16:01:WU01:FS00:0xa7:************************************ CBang *************************************
07:16:01:WU01:FS00:0xa7: Date: Nov 5 2019
07:16:01:WU01:FS00:0xa7: Time: 06:06:57
07:16:01:WU01:FS00:0xa7: Revision: 46c96f1aa8419571d83f3e63f9c99a0d602f6da9
07:16:01:WU01:FS00:0xa7: Branch: master
07:16:01:WU01:FS00:0xa7: Compiler: GNU 8.3.0
07:16:01:WU01:FS00:0xa7: Options: -std=c++11 -O3 -funroll-loops -fno-pie -fPIC
07:16:01:WU01:FS00:0xa7: Platform: linux2 4.19.0-5-amd64
07:16:01:WU01:FS00:0xa7: Bits: 64
07:16:01:WU01:FS00:0xa7: Mode: Release
07:16:01:WU01:FS00:0xa7:************************************ System ************************************
07:16:01:WU01:FS00:0xa7: CPU: AMD Ryzen 7 3700X 8-Core Processor
07:16:01:WU01:FS00:0xa7: CPU ID: AuthenticAMD Family 23 Model 113 Stepping 0
07:16:01:WU01:FS00:0xa7: CPUs: 16
07:16:01:WU01:FS00:0xa7: Memory: 31.37GiB
07:16:01:WU01:FS00:0xa7:Free Memory: 1.13GiB
07:16:01:WU01:FS00:0xa7: Threads: POSIX_THREADS
07:16:01:WU01:FS00:0xa7: OS Version: 5.3
07:16:01:WU01:FS00:0xa7:Has Battery: false
07:16:01:WU01:FS00:0xa7: On Battery: false
07:16:01:WU01:FS00:0xa7: UTC Offset: 1
07:16:01:WU01:FS00:0xa7: PID: 23016
07:16:01:WU01:FS00:0xa7: CWD: /home/anon/work
07:16:01:WU01:FS00:0xa7:******************************** Build - libFAH ********************************
07:16:01:WU01:FS00:0xa7: Version: 0.0.18
07:16:01:WU01:FS00:0xa7: Author: Joseph Coffland <joseph@cauldrondevelopment.com>
07:16:01:WU01:FS00:0xa7: Copyright: 2019 foldingathome.org
07:16:01:WU01:FS00:0xa7: Homepage: https://foldingathome.org/
07:16:01:WU01:FS00:0xa7: Date: Nov 5 2019
07:16:01:WU01:FS00:0xa7: Time: 06:13:26
07:16:01:WU01:FS00:0xa7: Revision: 490c9aa2957b725af319379424d5c5cb36efb656
07:16:01:WU01:FS00:0xa7: Branch: master
07:16:01:WU01:FS00:0xa7: Compiler: GNU 8.3.0
07:16:01:WU01:FS00:0xa7: Options: -std=c++11 -O3 -funroll-loops -fno-pie
07:16:01:WU01:FS00:0xa7: Platform: linux2 4.19.0-5-amd64
07:16:01:WU01:FS00:0xa7: Bits: 64
07:16:01:WU01:FS00:0xa7: Mode: Release
07:16:01:WU01:FS00:0xa7:************************************ Build *************************************
07:16:01:WU01:FS00:0xa7: SIMD: avx_256
07:16:01:WU01:FS00:0xa7:********************************************************************************
07:16:01:WU01:FS00:0xa7:Project: 13860 (Run 0, Clone 3921, Gen 0)
07:16:01:WU01:FS00:0xa7:Unit: 0x000000000d5a98395e725d67f03a15af
07:16:01:WU01:FS00:0xa7:Reading tar file core.xml
07:16:01:WU01:FS00:0xa7:Reading tar file frame0.tpr
07:16:01:WU01:FS00:0xa7:Digital signatures verified
07:16:01:WU01:FS00:0xa7:Calling: mdrun -s frame0.tpr -o frame0.trr -x frame0.xtc -e frame0.edr -cpt 15 -nt 15
07:16:01:WU01:FS00:0xa7:ERROR:
07:16:01:WU01:FS00:0xa7:ERROR:-------------------------------------------------------
07:16:01:WU01:FS00:0xa7:ERROR:Program GROMACS, VERSION 5.0.4-20191026-456f0d636-unknown
07:16:01:WU01:FS00:0xa7:ERROR:Source code file: /host/debian-stable-64bit-core-a7-avx-release/gromacs-core/build/gromacs/src/gromacs/fileio/gmxfio_xdr.c, line: 283
07:16:01:WU01:FS00:0xa7:ERROR:
07:16:01:WU01:FS00:0xa7:ERROR:Fatal error:
07:16:01:WU01:FS00:0xa7:ERROR:wrong string length 0 for string buf (source /host/debian-stable-64bit-core-a7-avx-release/gromacs-core/build/gromacs/src/gromacs/fileio/tpxio.c, line 3206)
07:16:01:WU01:FS00:0xa7:ERROR:For more information and tips for troubleshooting, please check the GROMACS
07:16:01:WU01:FS00:0xa7:ERROR:website at http://www.gromacs.org/Documentation/Errors
07:16:01:WU01:FS00:0xa7:ERROR:-------------------------------------------------------
07:16:06:WU01:FS00:0xa7:ERROR:
07:16:06:WU01:FS00:0xa7:ERROR:-------------------------------------------------------
07:16:06:WU01:FS00:0xa7:ERROR:Program GROMACS, VERSION 5.0.4-20191026-456f0d636-unknown
07:16:06:WU01:FS00:0xa7:ERROR:Source code file: /host/debian-stable-64bit-core-a7-avx-release/gromacs-core/build/gromacs/src/gromacs/fileio/tpxio.c, line: 3209
07:16:06:WU01:FS00:0xa7:ERROR:
07:16:06:WU01:FS00:0xa7:ERROR:Fatal error:
07:16:06:WU01:FS00:0xa7:ERROR:Can not read file frame0.tpr,
07:16:06:WU01:FS00:0xa7:ERROR: this file is from a Gromacs version which is older than 2.0
07:16:06:WU01:FS00:0xa7:ERROR: Make a new one with grompp or use a gro or pdb file, if possible
07:16:06:WU01:FS00:0xa7:ERROR:For more information and tips for troubleshooting, please check the GROMACS
07:16:06:WU01:FS00:0xa7:ERROR:website at http://www.gromacs.org/Documentation/Errors
07:16:06:WU01:FS00:0xa7:ERROR:-------------------------------------------------------
07:16:11:WU01:FS00:0xa7:ERROR:
07:16:11:WU01:FS00:0xa7:ERROR:-------------------------------------------------------
07:16:11:WU01:FS00:0xa7:ERROR:Program GROMACS, VERSION 5.0.4-20191026-456f0d636-unknown
07:16:11:WU01:FS00:0xa7:ERROR:Source code file: /host/debian-stable-64bit-core-a7-avx-release/gromacs-core/build/gromacs/src/gromacs/fileio/tpxio.c, line: 3218
07:16:11:WU01:FS00:0xa7:ERROR:
07:16:11:WU01:FS00:0xa7:ERROR:Fatal error:
07:16:11:WU01:FS00:0xa7:ERROR:Unknown precision in file frame0.tpr: real is 549316104 bytes instead of 4 or 8
07:16:11:WU01:FS00:0xa7:ERROR:For more information and tips for troubleshooting, please check the GROMACS
07:16:11:WU01:FS00:0xa7:ERROR:website at http://www.gromacs.org/Documentation/Errors
07:16:11:WU01:FS00:0xa7:ERROR:-------------------------------------------------------
07:16:16:WU01:FS00:0xa7:ERROR:
07:16:16:WU01:FS00:0xa7:ERROR:-------------------------------------------------------
07:16:16:WU01:FS00:0xa7:ERROR:Program GROMACS, VERSION 5.0.4-20191026-456f0d636-unknown
07:16:16:WU01:FS00:0xa7:ERROR:Source code file: /host/debian-stable-64bit-core-a7-avx-release/gromacs-core/build/gromacs/src/gromacs/fileio/gmxfio_xdr.c, line: 283
07:16:16:WU01:FS00:0xa7:ERROR:
07:16:16:WU01:FS00:0xa7:ERROR:Fatal error:
07:16:16:WU01:FS00:0xa7:ERROR:wrong string length 0 for string file_tag (source /host/debian-stable-64bit-core-a7-avx-release/gromacs-core/build/gromacs/src/gromacs/fileio/tpxio.c, line 3261)
07:16:16:WU01:FS00:0xa7:ERROR:For more information and tips for troubleshooting, please check the GROMACS
07:16:16:WU01:FS00:0xa7:ERROR:website at http://www.gromacs.org/Documentation/Errors
07:16:16:WU01:FS00:0xa7:ERROR:-------------------------------------------------------
07:16:21:WU01:FS00:0xa7:ERROR:
07:16:21:WU01:FS00:0xa7:ERROR:-------------------------------------------------------
07:16:21:WU01:FS00:0xa7:ERROR:Program GROMACS, VERSION 5.0.4-20191026-456f0d636-unknown
07:16:21:WU01:FS00:0xa7:ERROR:Source code file: /host/debian-stable-64bit-core-a7-avx-release/gromacs-core/build/gromacs/src/gromacs/fileio/tpxio.c, line: 3303
07:16:21:WU01:FS00:0xa7:ERROR:
07:16:21:WU01:FS00:0xa7:ERROR:Fatal error:
07:16:21:WU01:FS00:0xa7:ERROR:reading tpx file (frame0.tpr) version 549316480 with version 100 program
07:16:21:WU01:FS00:0xa7:ERROR:For more information and tips for troubleshooting, please check the GROMACS
07:16:21:WU01:FS00:0xa7:ERROR:website at http://www.gromacs.org/Documentation/Errors
07:16:21:WU01:FS00:0xa7:ERROR:-------------------------------------------------------
07:16:26:WU01:FS00:0xa7:WARNING:Unexpected exit() call
07:16:26:WU01:FS00:0xa7:WARNING:Unexpected exit from science code
07:16:26:WU01:FS00:0xa7:Saving result file ../logfile_01.txt
07:16:26:WU01:FS00:0xa7:Saving result file md.log
07:16:26:WU01:FS00:0xa7:Saving result file science.log
07:16:26:WU01:FS00:0xa7:Folding@home Core Shutdown: BAD_WORK_UNIT
07:16:27:WU01:FS00:FahCore returned: INTERRUPTED (102 = 0x66)