Here's the log:
Code: Select all
08:14:31:WU00:FS00:Starting
08:14:31:WU00:FS00:Removing old file './work/00/logfile_01-20200416-074250.txt'
08:14:31:WU00:FS00:Running FahCore: /usr/bin/FAHCoreWrapper /var/lib/fahclient/cores/cores.foldingathome.org/v7/lin/64bit/avx/Core_a7.fah/FahCore_a7 -dir 00 -suffix 01 -version 704 -lifeline 513 -checkpoint 15 -np 8
08:14:31:WU00:FS00:Started FahCore on PID 855
08:14:31:WU00:FS00:Core PID:859
08:14:31:WU00:FS00:FahCore 0xa7 started
08:14:31:WU00:FS00:0xa7:*********************** Log Started 2020-04-16T08:14:31Z ***********************
08:14:31:WU00:FS00:0xa7:************************** Gromacs Folding@home Core ***************************
08:14:31:WU00:FS00:0xa7: Type: 0xa7
08:14:31:WU00:FS00:0xa7: Core: Gromacs
08:14:31:WU00:FS00:0xa7: Args: -dir 00 -suffix 01 -version 704 -lifeline 855 -checkpoint 15 -np 8
08:14:31:WU00:FS00:0xa7:************************************ CBang *************************************
08:14:31:WU00:FS00:0xa7: Date: Nov 5 2019
08:14:31:WU00:FS00:0xa7: Time: 06:06:57
08:14:31:WU00:FS00:0xa7: Revision: 46c96f1aa8419571d83f3e63f9c99a0d602f6da9
08:14:31:WU00:FS00:0xa7: Branch: master
08:14:31:WU00:FS00:0xa7: Compiler: GNU 8.3.0
08:14:31:WU00:FS00:0xa7: Options: -std=c++11 -O3 -funroll-loops -fno-pie -fPIC
08:14:31:WU00:FS00:0xa7: Platform: linux2 4.19.0-5-amd64
08:14:31:WU00:FS00:0xa7: Bits: 64
08:14:31:WU00:FS00:0xa7: Mode: Release
08:14:31:WU00:FS00:0xa7:************************************ System ************************************
08:14:31:WU00:FS00:0xa7: CPU: Intel(R) Core(TM) i7-2600K CPU @ 3.40GHz
08:14:31:WU00:FS00:0xa7: CPU ID: GenuineIntel Family 6 Model 42 Stepping 7
08:14:31:WU00:FS00:0xa7: CPUs: 8
08:14:31:WU00:FS00:0xa7: Memory: 15.63GiB
08:14:31:WU00:FS00:0xa7:Free Memory: 15.40GiB
08:14:31:WU00:FS00:0xa7: Threads: POSIX_THREADS
08:14:31:WU00:FS00:0xa7: OS Version: 4.9
08:14:31:WU00:FS00:0xa7:Has Battery: false
08:14:31:WU00:FS00:0xa7: On Battery: false
08:14:31:WU00:FS00:0xa7: UTC Offset: -7
08:14:31:WU00:FS00:0xa7: PID: 859
08:14:31:WU00:FS00:0xa7: CWD: /var/lib/fahclient/work
08:14:31:WU00:FS00:0xa7:******************************** Build - libFAH ********************************
08:14:31:WU00:FS00:0xa7: Version: 0.0.18
08:14:31:WU00:FS00:0xa7: Author: Joseph Coffland <joseph@cauldrondevelopment.com>
08:14:31:WU00:FS00:0xa7: Copyright: 2019 foldingathome.org
08:14:31:WU00:FS00:0xa7: Homepage: https://foldingathome.org/
08:14:31:WU00:FS00:0xa7: Date: Nov 5 2019
08:14:31:WU00:FS00:0xa7: Time: 06:13:26
08:14:31:WU00:FS00:0xa7: Revision: 490c9aa2957b725af319379424d5c5cb36efb656
08:14:31:WU00:FS00:0xa7: Branch: master
08:14:31:WU00:FS00:0xa7: Compiler: GNU 8.3.0
08:14:31:WU00:FS00:0xa7: Options: -std=c++11 -O3 -funroll-loops -fno-pie
08:14:31:WU00:FS00:0xa7: Platform: linux2 4.19.0-5-amd64
08:14:31:WU00:FS00:0xa7: Bits: 64
08:14:31:WU00:FS00:0xa7: Mode: Release
08:14:31:WU00:FS00:0xa7:************************************ Build *************************************
08:14:31:WU00:FS00:0xa7: SIMD: avx_256
08:14:31:WU00:FS00:0xa7:********************************************************************************
08:14:31:WU00:FS00:0xa7:Project: 14531 (Run 0, Clone 1305, Gen 17)
08:14:31:WU00:FS00:0xa7:Unit: 0x0000001a80fccb0a5e6978bc26ce4efd
08:14:31:WU00:FS00:0xa7:Digital signatures verified
08:14:31:WU00:FS00:0xa7:Calling: mdrun -s frame17.tpr -o frame17.trr -cpi state.cpt -cpt 15 -nt 8
08:14:31:WU00:FS00:0xa7:Steps: first=4250000 total=250000
08:14:34:WU00:FS00:0xa7:Completed 223571 out of 250000 steps (89%)
08:14:36:WU00:FS00:0xa7:ERROR:
08:14:36:WU00:FS00:0xa7:ERROR:-------------------------------------------------------
08:14:36:WU00:FS00:0xa7:ERROR:Program GROMACS, VERSION 5.0.4-20191026-456f0d636-unknown
08:14:36:WU00:FS00:0xa7:ERROR:Source code file: /host/debian-stable-64bit-core-a7-avx-release/gromacs-core/build/gromacs/src/gromacs/mdlib/pme.c, line: 754
08:14:36:WU00:FS00:0xa7:ERROR:
08:14:36:WU00:FS00:0xa7:ERROR:Fatal error:
08:14:36:WU00:FS00:0xa7:ERROR:7 particles communicated to PME rank 0 are more than 2/3 times the cut-off out of the domain decomposition cell of their charge group in dimension x.
08:14:36:WU00:FS00:0xa7:ERROR:This usually means that your system is not well equilibrated.
08:14:36:WU00:FS00:0xa7:ERROR:For more information and tips for troubleshooting, please check the GROMACS
08:14:36:WU00:FS00:0xa7:ERROR:website at http://www.gromacs.org/Documentation/Errors
08:14:36:WU00:FS00:0xa7:ERROR:-------------------------------------------------------
08:14:36:WU00:FS00:0xa7:ERROR:
08:14:36:WU00:FS00:0xa7:ERROR:-------------------------------------------------------
08:14:36:WU00:FS00:0xa7:ERROR:Program GROMACS, VERSION 5.0.4-20191026-456f0d636-unknown
08:14:36:WU00:FS00:0xa7:ERROR:Source code file: /host/debian-stable-64bit-core-a7-avx-release/gromacs-core/build/gromacs/src/gromacs/mdlib/pme.c, line: 754
08:14:36:WU00:FS00:0xa7:ERROR:
08:14:36:WU00:FS00:0xa7:ERROR:Fatal error:
08:14:36:WU00:FS00:0xa7:ERROR:2 particles communicated to PME rank 7 are more than 2/3 times the cut-off out of the domain decomposition cell of their charge group in dimension x.
08:14:36:WU00:FS00:0xa7:ERROR:This usually means that your system is not well equilibrated.
08:14:36:WU00:FS00:0xa7:ERROR:For more information and tips for troubleshooting, please check the GROMACS
08:14:36:WU00:FS00:0xa7:ERROR:website at http://www.gromacs.org/Documentation/Errors
08:14:36:WU00:FS00:0xa7:ERROR:-------------------------------------------------------
08:14:41:WU00:FS00:FahCore returned: INTERRUPTED (102 = 0x66)