Code: Select all
19:41:58:WU01:FS00:FahCore returned: INTERRUPTED (102 = 0x66)
19:42:46:WU01:FS00:Starting
19:42:46:WU01:FS00:Removing old file 'work/01/logfile_01-20200726-191046.txt'
19:42:46:WU01:FS00:Running FahCore: /usr/bin/FAHCoreWrapper /home/deegee/FAH/cores/cores.foldingathome.org/lin/64bit-avx-256/a7-0.0.19/Core_a7.fah/FahCore_a7 -dir 01 -suffix 01 -version 706 -lifeline 3544 -checkpoint 15 -np 21
19:42:46:WU01:FS00:Started FahCore on PID 4164951
19:42:46:WU01:FS00:Core PID:4164955
19:42:46:WU01:FS00:FahCore 0xa7 started
19:42:47:WU01:FS00:0xa7:*********************** Log Started 2020-07-26T19:42:46Z ***********************
19:42:47:WU01:FS00:0xa7:************************** Gromacs Folding@home Core ***************************
19:42:47:WU01:FS00:0xa7: Type: 0xa7
19:42:47:WU01:FS00:0xa7: Core: Gromacs
19:42:47:WU01:FS00:0xa7: Args: -dir 01 -suffix 01 -version 706 -lifeline 4164951 -checkpoint 15
19:42:47:WU01:FS00:0xa7: -np 21
19:42:47:WU01:FS00:0xa7:************************************ CBang *************************************
19:42:47:WU01:FS00:0xa7: Date: Nov 27 2019
19:42:47:WU01:FS00:0xa7: Time: 11:26:54
19:42:47:WU01:FS00:0xa7: Revision: d25803215b59272441049dfa05a0a9bf7a6e3c48
19:42:47:WU01:FS00:0xa7: Branch: master
19:42:47:WU01:FS00:0xa7: Compiler: GNU 8.3.0
19:42:47:WU01:FS00:0xa7: Options: -std=c++11 -ffunction-sections -fdata-sections -O3 -funroll-loops
19:42:47:WU01:FS00:0xa7: -fno-pie -fPIC
19:42:47:WU01:FS00:0xa7: Platform: linux2 4.19.0-5-amd64
19:42:47:WU01:FS00:0xa7: Bits: 64
19:42:47:WU01:FS00:0xa7: Mode: Release
19:42:47:WU01:FS00:0xa7:************************************ System ************************************
19:42:47:WU01:FS00:0xa7: CPU: AMD Ryzen 9 3900X 12-Core Processor
19:42:47:WU01:FS00:0xa7: CPU ID: AuthenticAMD Family 23 Model 113 Stepping 0
19:42:47:WU01:FS00:0xa7: CPUs: 24
19:42:47:WU01:FS00:0xa7: Memory: 31.33GiB
19:42:47:WU01:FS00:0xa7:Free Memory: 1.94GiB
19:42:47:WU01:FS00:0xa7: Threads: POSIX_THREADS
19:42:47:WU01:FS00:0xa7: OS Version: 5.4
19:42:47:WU01:FS00:0xa7:Has Battery: false
19:42:47:WU01:FS00:0xa7: On Battery: false
19:42:47:WU01:FS00:0xa7: UTC Offset: 3
19:42:47:WU01:FS00:0xa7: PID: 4164955
19:42:47:WU01:FS00:0xa7: CWD: /home/deegee/FAH/work
19:42:47:WU01:FS00:0xa7:******************************** Build - libFAH ********************************
19:42:47:WU01:FS00:0xa7: Version: 0.0.19
19:42:47:WU01:FS00:0xa7: Author: Joseph Coffland <joseph@cauldrondevelopment.com>
19:42:47:WU01:FS00:0xa7: Copyright: 2019 foldingathome.org
19:42:47:WU01:FS00:0xa7: Homepage: https://foldingathome.org/
19:42:47:WU01:FS00:0xa7: Date: Nov 26 2019
19:42:47:WU01:FS00:0xa7: Time: 00:41:42
19:42:47:WU01:FS00:0xa7: Revision: d5b5c747532224f986b7cd02c968ed9a20c16d6e
19:42:47:WU01:FS00:0xa7: Branch: master
19:42:47:WU01:FS00:0xa7: Compiler: GNU 8.3.0
19:42:47:WU01:FS00:0xa7: Options: -std=c++11 -ffunction-sections -fdata-sections -O3 -funroll-loops
19:42:47:WU01:FS00:0xa7: -fno-pie
19:42:47:WU01:FS00:0xa7: Platform: linux2 4.19.0-5-amd64
19:42:47:WU01:FS00:0xa7: Bits: 64
19:42:47:WU01:FS00:0xa7: Mode: Release
19:42:47:WU01:FS00:0xa7:************************************ Build *************************************
19:42:47:WU01:FS00:0xa7: SIMD: avx_256
19:42:47:WU01:FS00:0xa7:********************************************************************************
19:42:47:WU01:FS00:0xa7:Project: 14816 (Run 2472, Clone 1, Gen 0)
19:42:47:WU01:FS00:0xa7:Unit: 0x00000007455e42065ec7cdc9fbb08dec
19:42:47:WU01:FS00:0xa7:Digital signatures verified
19:42:47:WU01:FS00:0xa7:Calling: mdrun -s frame0.tpr -o frame0.trr -cpt 15 -nt 21
19:42:47:WU01:FS00:0xa7:Steps: first=0 total=250000
19:42:47:WU01:FS00:0xa7:Completed 1 out of 250000 steps (0%)
19:42:48:WU01:FS00:0xa7:ERROR:
19:42:48:WU01:FS00:0xa7:ERROR:-------------------------------------------------------
19:42:48:WU01:FS00:0xa7:ERROR:
19:42:48:WU01:FS00:0xa7:ERROR:-------------------------------------------------------
19:42:48:WU01:FS00:0xa7:ERROR:Program GROMACS, VERSION 5.0.4-20191026-456f0d636-unknown
19:42:48:WU01:FS00:0xa7:ERROR:Source code file: /host/debian-stable-64bit-core-a7-avx-release/gromacs-core/build/gromacs/src/gromacs/mdlib/pme.c, line: 754
19:42:48:WU01:FS00:0xa7:ERROR:
19:42:48:WU01:FS00:0xa7:ERROR:Fatal error:
19:42:48:WU01:FS00:0xa7:ERROR:2 particles communicated to PME rank 0 are more than 2/3 times the cut-off out of the domain decomposition cell of their charge group in dimension x.
19:42:48:WU01:FS00:0xa7:ERROR:This usually means that your system is not well equilibrated.
19:42:48:WU01:FS00:0xa7:ERROR:For more information and tips for troubleshooting, please check the GROMACS
19:42:48:WU01:FS00:0xa7:ERROR:website at http://www.gromacs.org/Documentation/Errors
19:42:48:WU01:FS00:0xa7:ERROR:-------------------------------------------------------
19:42:48:WU01:FS00:0xa7:ERROR:Program GROMACS, VERSION 5.0.4-20191026-456f0d636-unknown
19:42:48:WU01:FS00:0xa7:ERROR:Source code file: /host/debian-stable-64bit-core-a7-avx-release/gromacs-core/build/gromacs/src/gromacs/mdlib/pme.c, line: 754
19:42:48:WU01:FS00:0xa7:ERROR:
19:42:48:WU01:FS00:0xa7:ERROR:Fatal error:
19:42:48:WU01:FS00:0xa7:ERROR:2 particles communicated to PME rank 7 are more than 2/3 times the cut-off out of the domain decomposition cell of their charge group in dimension x.
19:42:48:WU01:FS00:0xa7:ERROR:This usually means that your system is not well equilibrated.
19:42:48:WU01:FS00:0xa7:ERROR:For more information and tips for troubleshooting, please check the GROMACS
19:42:48:WU01:FS00:0xa7:ERROR:website at http://www.gromacs.org/Documentation/Errors
19:42:48:WU01:FS00:0xa7:ERROR:-------------------------------------------------------
19:42:53:WU01:FS00:0xa7:ERROR:
19:42:53:WU01:FS00:0xa7:ERROR:-------------------------------------------------------
19:42:53:WU01:FS00:0xa7:ERROR:Program GROMACS, VERSION 5.0.4-20191026-456f0d636-unknown
19:42:53:WU01:FS00:0xa7:ERROR:
19:42:53:WU01:FS00:0xa7:ERROR:-------------------------------------------------------
19:42:53:WU01:FS00:0xa7:ERROR:Program GROMACS, VERSION 5.0.4-20191026-456f0d636-unknown
19:42:53:WU01:FS00:0xa7:ERROR:Source code file: /host/debian-stable-64bit-core-a7-avx-release/gromacs-core/build/gromacs/src/gromacs/mdlib/pme.c, line: 754
19:42:53:WU01:FS00:0xa7:ERROR:
19:42:53:WU01:FS00:0xa7:ERROR:Fatal error:
19:42:53:WU01:FS00:0xa7:ERROR:5 particles communicated to PME rank 7 are more than 2/3 times the cut-off out of the domain decomposition cell of their charge group in dimension x.
19:42:53:WU01:FS00:0xa7:ERROR:This usually means that your system is not well equilibrated.
19:42:53:WU01:FS00:0xa7:ERROR:For more information and tips for troubleshooting, please check the GROMACS
19:42:53:WU01:FS00:0xa7:ERROR:website at http://www.gromacs.org/Documentation/Errors
19:42:53:WU01:FS00:0xa7:ERROR:-------------------------------------------------------
19:42:53:WU01:FS00:0xa7:ERROR:
19:42:53:WU01:FS00:0xa7:ERROR:-------------------------------------------------------
19:42:53:WU01:FS00:0xa7:ERROR:Program GROMACS, VERSION 5.0.4-20191026-456f0d636-unknown
19:42:53:WU01:FS00:0xa7:ERROR:Source code file: /host/debian-stable-64bit-core-a7-avx-release/gromacs-core/build/gromacs/src/gromacs/mdlib/pme.c, line: 754
19:42:53:WU01:FS00:0xa7:ERROR:
19:42:53:WU01:FS00:0xa7:ERROR:Fatal error:
19:42:53:WU01:FS00:0xa7:ERROR:13 particles communicated to PME rank 0 are more than 2/3 times the cut-off out of the domain decomposition cell of their charge group in dimension x.
19:42:53:WU01:FS00:0xa7:ERROR:This usually means that your system is not well equilibrated.
19:42:53:WU01:FS00:0xa7:ERROR:For more information and tips for troubleshooting, please check the GROMACS
19:42:53:WU01:FS00:0xa7:ERROR:Source code file: /host/debian-stable-64bit-core-a7-avx-release/gromacs-core/build/gromacs/src/gromacs/mdlib/pme.c, line: 754
19:42:53:WU01:FS00:0xa7:ERROR:
19:42:53:WU01:FS00:0xa7:ERROR:Fatal error:
19:42:53:WU01:FS00:0xa7:ERROR:2 particles communicated to PME rank 1 are more than 2/3 times the cut-off out of the domain decomposition cell of their charge group in dimension x.
19:42:53:WU01:FS00:0xa7:ERROR:This usually means that your system is not well equilibrated.
19:42:53:WU01:FS00:0xa7:ERROR:For more information and tips for troubleshooting, please check the GROMACS
19:42:53:WU01:FS00:0xa7:ERROR:website at http://www.gromacs.org/Documentation/Errors
19:42:53:WU01:FS00:0xa7:ERROR:-------------------------------------------------------
19:42:53:WU01:FS00:0xa7:ERROR:website at http://www.gromacs.org/Documentation/Errors
19:42:53:WU01:FS00:0xa7:ERROR:-------------------------------------------------------
19:42:58:WU01:FS00:FahCore returned: INTERRUPTED (102 = 0x66)
19:43:46:WU01:FS00:Starting
19:43:46:WU01:FS00:Removing old file 'work/01/logfile_01-20200726-191146.txt'
19:43:46:WU01:FS00:Running FahCore: /usr/bin/FAHCoreWrapper /home/deegee/FAH/cores/cores.foldingathome.org/lin/64bit-avx-256/a7-0.0.19/Core_a7.fah/FahCore_a7 -dir 01 -suffix 01 -version 706 -lifeline 3544 -checkpoint 15 -np 21
19:43:46:WU01:FS00:Started FahCore on PID 4166103
19:43:46:WU01:FS00:Core PID:4166107
19:43:46:WU01:FS00:FahCore 0xa7 started
19:43:47:WU01:FS00:0xa7:*********************** Log Started 2020-07-26T19:43:46Z ***********************
19:43:47:WU01:FS00:0xa7:************************** Gromacs Folding@home Core ***************************
19:43:47:WU01:FS00:0xa7: Type: 0xa7
19:43:47:WU01:FS00:0xa7: Core: Gromacs
19:43:47:WU01:FS00:0xa7: Args: -dir 01 -suffix 01 -version 706 -lifeline 4166103 -checkpoint 15
19:43:47:WU01:FS00:0xa7: -np 21
19:43:47:WU01:FS00:0xa7:************************************ CBang *************************************
19:43:47:WU01:FS00:0xa7: Date: Nov 27 2019
19:43:47:WU01:FS00:0xa7: Time: 11:26:54
19:43:47:WU01:FS00:0xa7: Revision: d25803215b59272441049dfa05a0a9bf7a6e3c48
19:43:47:WU01:FS00:0xa7: Branch: master
19:43:47:WU01:FS00:0xa7: Compiler: GNU 8.3.0
19:43:47:WU01:FS00:0xa7: Options: -std=c++11 -ffunction-sections -fdata-sections -O3 -funroll-loops
19:43:47:WU01:FS00:0xa7: -fno-pie -fPIC
19:43:47:WU01:FS00:0xa7: Platform: linux2 4.19.0-5-amd64
19:43:47:WU01:FS00:0xa7: Bits: 64
19:43:47:WU01:FS00:0xa7: Mode: Release
19:43:47:WU01:FS00:0xa7:************************************ System ************************************
19:43:47:WU01:FS00:0xa7: CPU: AMD Ryzen 9 3900X 12-Core Processor
19:43:47:WU01:FS00:0xa7: CPU ID: AuthenticAMD Family 23 Model 113 Stepping 0
19:43:47:WU01:FS00:0xa7: CPUs: 24
19:43:47:WU01:FS00:0xa7: Memory: 31.33GiB
19:43:47:WU01:FS00:0xa7:Free Memory: 1.92GiB
19:43:47:WU01:FS00:0xa7: Threads: POSIX_THREADS
19:43:47:WU01:FS00:0xa7: OS Version: 5.4
19:43:47:WU01:FS00:0xa7:Has Battery: false
19:43:47:WU01:FS00:0xa7: On Battery: false
19:43:47:WU01:FS00:0xa7: UTC Offset: 3
19:43:47:WU01:FS00:0xa7: PID: 4166107
19:43:47:WU01:FS00:0xa7: CWD: /home/deegee/FAH/work
19:43:47:WU01:FS00:0xa7:******************************** Build - libFAH ********************************
19:43:47:WU01:FS00:0xa7: Version: 0.0.19
19:43:47:WU01:FS00:0xa7: Author: Joseph Coffland <joseph@cauldrondevelopment.com>
19:43:47:WU01:FS00:0xa7: Copyright: 2019 foldingathome.org
19:43:47:WU01:FS00:0xa7: Homepage: https://foldingathome.org/
19:43:47:WU01:FS00:0xa7: Date: Nov 26 2019
19:43:47:WU01:FS00:0xa7: Time: 00:41:42
19:43:47:WU01:FS00:0xa7: Revision: d5b5c747532224f986b7cd02c968ed9a20c16d6e
19:43:47:WU01:FS00:0xa7: Branch: master
19:43:47:WU01:FS00:0xa7: Compiler: GNU 8.3.0
19:43:47:WU01:FS00:0xa7: Options: -std=c++11 -ffunction-sections -fdata-sections -O3 -funroll-loops
19:43:47:WU01:FS00:0xa7: -fno-pie
19:43:47:WU01:FS00:0xa7: Platform: linux2 4.19.0-5-amd64
19:43:47:WU01:FS00:0xa7: Bits: 64
19:43:47:WU01:FS00:0xa7: Mode: Release
19:43:47:WU01:FS00:0xa7:************************************ Build *************************************
19:43:47:WU01:FS00:0xa7: SIMD: avx_256
19:43:47:WU01:FS00:0xa7:********************************************************************************
19:43:47:WU01:FS00:0xa7:Project: 14816 (Run 2472, Clone 1, Gen 0)
19:43:47:WU01:FS00:0xa7:Unit: 0x00000007455e42065ec7cdc9fbb08dec
19:43:47:WU01:FS00:0xa7:Digital signatures verified
19:43:47:WU01:FS00:0xa7:Calling: mdrun -s frame0.tpr -o frame0.trr -cpt 15 -nt 21
19:43:47:WU01:FS00:0xa7:Steps: first=0 total=250000
19:43:48:WU01:FS00:0xa7:Completed 1 out of 250000 steps (0%)
19:43:48:WU01:FS00:0xa7:ERROR:
19:43:48:WU01:FS00:0xa7:ERROR:-------------------------------------------------------
19:43:48:WU01:FS00:0xa7:ERROR:
19:43:48:WU01:FS00:0xa7:ERROR:-------------------------------------------------------
19:43:48:WU01:FS00:0xa7:ERROR:Program GROMACS, VERSION 5.0.4-20191026-456f0d636-unknown
19:43:48:WU01:FS00:0xa7:ERROR:Source code file: /host/debian-stable-64bit-core-a7-avx-release/gromacs-core/build/gromacs/src/gromacs/mdlib/pme.c, line: 754
19:43:48:WU01:FS00:0xa7:ERROR:
19:43:48:WU01:FS00:0xa7:ERROR:Fatal error:
19:43:48:WU01:FS00:0xa7:ERROR:Program GROMACS, VERSION 5.0.4-20191026-456f0d636-unknown
19:43:48:WU01:FS00:0xa7:ERROR:Source code file: /host/debian-stable-64bit-core-a7-avx-release/gromacs-core/build/gromacs/src/gromacs/mdlib/pme.c, line: 754
19:43:48:WU01:FS00:0xa7:ERROR:
19:43:48:WU01:FS00:0xa7:ERROR:Fatal error:
19:43:48:WU01:FS00:0xa7:ERROR:2 particles communicated to PME rank 0 are more than 2/3 times the cut-off out of the domain decomposition cell of their charge group in dimension x.
19:43:48:WU01:FS00:0xa7:ERROR:This usually means that your system is not well equilibrated.
19:43:48:WU01:FS00:0xa7:ERROR:For more information and tips for troubleshooting, please check the GROMACS
19:43:48:WU01:FS00:0xa7:ERROR:website at http://www.gromacs.org/Documentation/Errors
19:43:48:WU01:FS00:0xa7:ERROR:-------------------------------------------------------
19:43:48:WU01:FS00:0xa7:ERROR:2 particles communicated to PME rank 7 are more than 2/3 times the cut-off out of the domain decomposition cell of their charge group in dimension x.
19:43:48:WU01:FS00:0xa7:ERROR:This usually means that your system is not well equilibrated.
19:43:48:WU01:FS00:0xa7:ERROR:For more information and tips for troubleshooting, please check the GROMACS
19:43:48:WU01:FS00:0xa7:ERROR:website at http://www.gromacs.org/Documentation/Errors
19:43:48:WU01:FS00:0xa7:ERROR:-------------------------------------------------------
19:43:53:WU01:FS00:0xa7:ERROR:
19:43:53:WU01:FS00:0xa7:ERROR:-------------------------------------------------------
19:43:53:WU01:FS00:0xa7:ERROR:Program GROMACS, VERSION 5.0.4-20191026-456f0d636-unknown
19:43:53:WU01:FS00:0xa7:ERROR:
19:43:53:WU01:FS00:0xa7:ERROR:-------------------------------------------------------
19:43:53:WU01:FS00:0xa7:ERROR:Program GROMACS, VERSION 5.0.4-20191026-456f0d636-unknown
19:43:53:WU01:FS00:0xa7:ERROR:Source code file: /host/debian-stable-64bit-core-a7-avx-release/gromacs-core/build/gromacs/src/gromacs/mdlib/pme.c, line: 754
19:43:53:WU01:FS00:0xa7:ERROR:
19:43:53:WU01:FS00:0xa7:ERROR:Fatal error:
19:43:53:WU01:FS00:0xa7:ERROR:12 particles communicated to PME rank 0 are more than 2/3 times the cut-off out of the domain decomposition cell of their charge group in dimension x.
19:43:53:WU01:FS00:0xa7:ERROR:This usually means that your system is not well equilibrated.
19:43:53:WU01:FS00:0xa7:ERROR:For more information and tips for troubleshooting, please check the GROMACS
19:43:53:WU01:FS00:0xa7:ERROR:Source code file: /host/debian-stable-64bit-core-a7-avx-release/gromacs-core/build/gromacs/src/gromacs/mdlib/pme.c, line: 754
19:43:53:WU01:FS00:0xa7:ERROR:
19:43:53:WU01:FS00:0xa7:ERROR:Fatal error:
19:43:53:WU01:FS00:0xa7:ERROR:2 particles communicated to PME rank 1 are more than 2/3 times the cut-off out of the domain decomposition cell of their charge group in dimension x.
19:43:53:WU01:FS00:0xa7:ERROR:This usually means that your system is not well equilibrated.
19:43:53:WU01:FS00:0xa7:ERROR:For more information and tips for troubleshooting, please check the GROMACS
19:43:53:WU01:FS00:0xa7:ERROR:website at http://www.gromacs.org/Documentation/Errors
19:43:53:WU01:FS00:0xa7:ERROR:-------------------------------------------------------
19:43:53:WU01:FS00:0xa7:ERROR:
19:43:53:WU01:FS00:0xa7:ERROR:-------------------------------------------------------
19:43:53:WU01:FS00:0xa7:ERROR:Program GROMACS, VERSION 5.0.4-20191026-456f0d636-unknown
19:43:53:WU01:FS00:0xa7:ERROR:Source code file: /host/debian-stable-64bit-core-a7-avx-release/gromacs-core/build/gromacs/src/gromacs/mdlib/pme.c, line: 754
19:43:53:WU01:FS00:0xa7:ERROR:
19:43:53:WU01:FS00:0xa7:ERROR:Fatal error:
19:43:53:WU01:FS00:0xa7:ERROR:6 particles communicated to PME rank 7 are more than 2/3 times the cut-off out of the domain decomposition cell of their charge group in dimension x.
19:43:53:WU01:FS00:0xa7:ERROR:This usually means that your system is not well equilibrated.
19:43:53:WU01:FS00:0xa7:ERROR:For more information and tips for troubleshooting, please check the GROMACS
19:43:53:WU01:FS00:0xa7:ERROR:website at http://www.gromacs.org/Documentation/Errors
19:43:53:WU01:FS00:0xa7:ERROR:-------------------------------------------------------
19:43:53:WU01:FS00:0xa7:ERROR:website at http://www.gromacs.org/Documentation/Errors
19:43:53:WU01:FS00:0xa7:ERROR:-------------------------------------------------------
19:43:58:WU01:FS00:FahCore returned: INTERRUPTED (102 = 0x66)
19:44:46:WU01:FS00:Starting
19:44:46:WU01:FS00:Removing old file 'work/01/logfile_01-20200726-191246.txt'
19:44:46:WU01:FS00:Running FahCore: /usr/bin/FAHCoreWrapper /home/deegee/FAH/cores/cores.foldingathome.org/lin/64bit-avx-256/a7-0.0.19/Core_a7.fah/FahCore_a7 -dir 01 -suffix 01 -version 706 -lifeline 3544 -checkpoint 15 -np 21
19:44:46:WU01:FS00:Started FahCore on PID 4167195
19:44:46:WU01:FS00:Core PID:4167199
19:44:46:WU01:FS00:FahCore 0xa7 started
19:44:47:WU01:FS00:0xa7:*********************** Log Started 2020-07-26T19:44:46Z ***********************
19:44:47:WU01:FS00:0xa7:************************** Gromacs Folding@home Core ***************************
19:44:47:WU01:FS00:0xa7: Type: 0xa7
19:44:47:WU01:FS00:0xa7: Core: Gromacs
19:44:47:WU01:FS00:0xa7: Args: -dir 01 -suffix 01 -version 706 -lifeline 4167195 -checkpoint 15
19:44:47:WU01:FS00:0xa7: -np 21
19:44:47:WU01:FS00:0xa7:************************************ CBang *************************************
19:44:47:WU01:FS00:0xa7: Date: Nov 27 2019
19:44:47:WU01:FS00:0xa7: Time: 11:26:54
19:44:47:WU01:FS00:0xa7: Revision: d25803215b59272441049dfa05a0a9bf7a6e3c48
19:44:47:WU01:FS00:0xa7: Branch: master
19:44:47:WU01:FS00:0xa7: Compiler: GNU 8.3.0
19:44:47:WU01:FS00:0xa7: Options: -std=c++11 -ffunction-sections -fdata-sections -O3 -funroll-loops
19:44:47:WU01:FS00:0xa7: -fno-pie -fPIC
19:44:47:WU01:FS00:0xa7: Platform: linux2 4.19.0-5-amd64
19:44:47:WU01:FS00:0xa7: Bits: 64
19:44:47:WU01:FS00:0xa7: Mode: Release
19:44:47:WU01:FS00:0xa7:************************************ System ************************************
19:44:47:WU01:FS00:0xa7: CPU: AMD Ryzen 9 3900X 12-Core Processor
19:44:47:WU01:FS00:0xa7: CPU ID: AuthenticAMD Family 23 Model 113 Stepping 0
19:44:47:WU01:FS00:0xa7: CPUs: 24
19:44:47:WU01:FS00:0xa7: Memory: 31.33GiB
19:44:47:WU01:FS00:0xa7:Free Memory: 1.91GiB
19:44:47:WU01:FS00:0xa7: Threads: POSIX_THREADS
19:44:47:WU01:FS00:0xa7: OS Version: 5.4
19:44:47:WU01:FS00:0xa7:Has Battery: false
19:44:47:WU01:FS00:0xa7: On Battery: false
19:44:47:WU01:FS00:0xa7: UTC Offset: 3
19:44:47:WU01:FS00:0xa7: PID: 4167199
19:44:47:WU01:FS00:0xa7: CWD: /home/deegee/FAH/work
19:44:47:WU01:FS00:0xa7:******************************** Build - libFAH ********************************
19:44:47:WU01:FS00:0xa7: Version: 0.0.19
19:44:47:WU01:FS00:0xa7: Author: Joseph Coffland <joseph@cauldrondevelopment.com>
19:44:47:WU01:FS00:0xa7: Copyright: 2019 foldingathome.org
19:44:47:WU01:FS00:0xa7: Homepage: https://foldingathome.org/
19:44:47:WU01:FS00:0xa7: Date: Nov 26 2019
19:44:47:WU01:FS00:0xa7: Time: 00:41:42
19:44:47:WU01:FS00:0xa7: Revision: d5b5c747532224f986b7cd02c968ed9a20c16d6e
19:44:47:WU01:FS00:0xa7: Branch: master
19:44:47:WU01:FS00:0xa7: Compiler: GNU 8.3.0
19:44:47:WU01:FS00:0xa7: Options: -std=c++11 -ffunction-sections -fdata-sections -O3 -funroll-loops
19:44:47:WU01:FS00:0xa7: -fno-pie
19:44:47:WU01:FS00:0xa7: Platform: linux2 4.19.0-5-amd64
19:44:47:WU01:FS00:0xa7: Bits: 64
19:44:47:WU01:FS00:0xa7: Mode: Release
19:44:47:WU01:FS00:0xa7:************************************ Build *************************************
19:44:47:WU01:FS00:0xa7: SIMD: avx_256
19:44:47:WU01:FS00:0xa7:********************************************************************************
19:44:47:WU01:FS00:0xa7:Project: 14816 (Run 2472, Clone 1, Gen 0)
19:44:47:WU01:FS00:0xa7:Unit: 0x00000007455e42065ec7cdc9fbb08dec
19:44:47:WU01:FS00:0xa7:Digital signatures verified
19:44:47:WU01:FS00:0xa7:Calling: mdrun -s frame0.tpr -o frame0.trr -cpt 15 -nt 21
19:44:47:WU01:FS00:0xa7:Steps: first=0 total=250000
19:44:48:WU01:FS00:0xa7:Completed 1 out of 250000 steps (0%)
19:44:48:WU01:FS00:0xa7:ERROR:
19:44:48:WU01:FS00:0xa7:ERROR:-------------------------------------------------------
19:44:48:WU01:FS00:0xa7:ERROR:Program GROMACS, VERSION 5.0.4-20191026-456f0d636-unknown
19:44:48:WU01:FS00:0xa7:ERROR:Source code file: /host/debian-stable-64bit-core-a7-avx-release/gromacs-core/build/gromacs/src/gromacs/mdlib/pme.c, line: 754
19:44:48:WU01:FS00:0xa7:ERROR:
19:44:48:WU01:FS00:0xa7:ERROR:-------------------------------------------------------
19:44:48:WU01:FS00:0xa7:ERROR:Program GROMACS, VERSION 5.0.4-20191026-456f0d636-unknown
19:44:48:WU01:FS00:0xa7:ERROR:Source code file: /host/debian-stable-64bit-core-a7-avx-release/gromacs-core/build/gromacs/src/gromacs/mdlib/pme.c, line: 754
19:44:48:WU01:FS00:0xa7:ERROR:
19:44:48:WU01:FS00:0xa7:ERROR:Fatal error:
19:44:48:WU01:FS00:0xa7:ERROR:2 particles communicated to PME rank 7 are more than 2/3 times the cut-off out of the domain decomposition cell of their charge group in dimension x.
19:44:48:WU01:FS00:0xa7:ERROR:This usually means that your system is not well equilibrated.
19:44:48:WU01:FS00:0xa7:ERROR:For more information and tips for troubleshooting, please check the GROMACS
19:44:48:WU01:FS00:0xa7:ERROR:website at http://www.gromacs.org/Documentation/Errors
19:44:48:WU01:FS00:0xa7:ERROR:-------------------------------------------------------
19:44:48:WU01:FS00:0xa7:ERROR:
19:44:48:WU01:FS00:0xa7:ERROR:Fatal error:
19:44:48:WU01:FS00:0xa7:ERROR:2 particles communicated to PME rank 0 are more than 2/3 times the cut-off out of the domain decomposition cell of their charge group in dimension x.
19:44:48:WU01:FS00:0xa7:ERROR:This usually means that your system is not well equilibrated.
19:44:48:WU01:FS00:0xa7:ERROR:For more information and tips for troubleshooting, please check the GROMACS
19:44:48:WU01:FS00:0xa7:ERROR:website at http://www.gromacs.org/Documentation/Errors
19:44:48:WU01:FS00:0xa7:ERROR:-------------------------------------------------------
19:44:53:WU01:FS00:0xa7:ERROR:
19:44:53:WU01:FS00:0xa7:ERROR:-------------------------------------------------------
19:44:53:WU01:FS00:0xa7:ERROR:Program GROMACS, VERSION 5.0.4-20191026-456f0d636-unknown
19:44:53:WU01:FS00:0xa7:ERROR:Source code file: /host/debian-stable-64bit-core-a7-avx-release/gromacs-core/build/gromacs/src/gromacs/mdlib/pme.c, line: 754
19:44:53:WU01:FS00:0xa7:ERROR:
19:44:53:WU01:FS00:0xa7:ERROR:Fatal error:
19:44:53:WU01:FS00:0xa7:ERROR:12 particles communicated to PME rank 0 are more than 2/3 times the cut-off out of the domain decomposition cell of their charge group in dimension x.
19:44:53:WU01:FS00:0xa7:ERROR:This usually means that your system is not well equilibrated.
19:44:53:WU01:FS00:0xa7:ERROR:For more information and tips for troubleshooting, please check the GROMACS
19:44:53:WU01:FS00:0xa7:ERROR:website at http://www.gromacs.org/Documentation/Errors
19:44:53:WU01:FS00:0xa7:ERROR:-------------------------------------------------------
19:44:53:WU01:FS00:0xa7:ERROR:
19:44:53:WU01:FS00:0xa7:ERROR:-------------------------------------------------------
19:44:53:WU01:FS00:0xa7:ERROR:Program GROMACS, VERSION 5.0.4-20191026-456f0d636-unknown
19:44:53:WU01:FS00:0xa7:ERROR:Source code file: /host/debian-stable-64bit-core-a7-avx-release/gromacs-core/build/gromacs/src/gromacs/mdlib/pme.c, line: 754
19:44:53:WU01:FS00:0xa7:ERROR:
19:44:53:WU01:FS00:0xa7:ERROR:Fatal error:
19:44:53:WU01:FS00:0xa7:ERROR:2 particles communicated to PME rank 1 are more than 2/3 times the cut-off out of the domain decomposition cell of their charge group in dimension x.
19:44:53:WU01:FS00:0xa7:ERROR:This usually means that your system is not well equilibrated.
19:44:53:WU01:FS00:0xa7:ERROR:For more information and tips for troubleshooting, please check the GROMACS
19:44:53:WU01:FS00:0xa7:ERROR:website at http://www.gromacs.org/Documentation/Errors
19:44:53:WU01:FS00:0xa7:ERROR:-------------------------------------------------------
19:44:53:WU01:FS00:0xa7:ERROR:
19:44:53:WU01:FS00:0xa7:ERROR:-------------------------------------------------------
19:44:53:WU01:FS00:0xa7:ERROR:Program GROMACS, VERSION 5.0.4-20191026-456f0d636-unknown
19:44:53:WU01:FS00:0xa7:ERROR:Source code file: /host/debian-stable-64bit-core-a7-avx-release/gromacs-core/build/gromacs/src/gromacs/mdlib/pme.c, line: 754
19:44:53:WU01:FS00:0xa7:ERROR:
19:44:53:WU01:FS00:0xa7:ERROR:Fatal error:
19:44:53:WU01:FS00:0xa7:ERROR:6 particles communicated to PME rank 7 are more than 2/3 times the cut-off out of the domain decomposition cell of their charge group in dimension x.
19:44:53:WU01:FS00:0xa7:ERROR:This usually means that your system is not well equilibrated.
19:44:53:WU01:FS00:0xa7:ERROR:For more information and tips for troubleshooting, please check the GROMACS
19:44:53:WU01:FS00:0xa7:ERROR:website at http://www.gromacs.org/Documentation/Errors
19:44:53:WU01:FS00:0xa7:ERROR:-------------------------------------------------------