p11707 to ADVANCED

Any announcements about FAH policy, servers and new projects will be made here.

Moderators: Site Moderators, FAHC Science Team

Post Reply
rafwiewiora
Scientist
Posts: 167
Joined: Mon Aug 03, 2015 8:23 pm
Location: New York

p11707 to ADVANCED

Post by rafwiewiora »

Stats:
# atoms: 35200
credit: 15965
k-factor: 0.75
timeout: 7d
deadline: 10d

11707: Protein lysine methyltransferase SETD8, we have used Ensembler (http://ensembler.readthedocs.org/en/latest/) to generate models from all chains in all available crystal structures - 23 in total. This is the same protein as project 10478, where we started only from two conformations. While I’m analyzing the 1ms (very nice!) of data we’ve gathered there, we’re starting this also with more heterogenous initial conformation seeding. This is part of a bigger ‘operation SETD8’ - next project coming will be a study of this protein in all states of its catalytic cycle to understand changes it undergoes during enzymatic activity and binding of other species.

We have 23 RUNs here, mixed precision is enforced (no-DP GPUs excluded).

Thanks everyone for testing!
Post Reply