Core 21.0.0.18 update

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Core 21.0.0.18 update

Postby silverpulser » Mon Feb 13, 2017 5:32 pm

I am getting the known issue of an error :
22:54:01:WARNING:FS01:Size of positions 18928 does not match topology 18843
Looking at the announcement on the 20th January it said that a workaround should be available in a week.
Is that still the case and if it has bee addressed am I just getting WU before the fix?
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Posts: 76
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Re: Core 21.0.0.18 update

Postby ComputerGenie » Mon Feb 13, 2017 5:45 pm

"does not match topology" is a known issue (that has no effect on folding or points) and will supposedly be fixed in the future.
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Posts: 242
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Re: Core 21.0.0.18 update

Postby Amaruk » Sun Jun 03, 2018 5:14 am

Looks like it's still on the 'soon' list. :wink:

Code: Select all
*********************** Log Started 2018-06-02T06:25:22Z ***********************
06:25:22:************************* Folding@home Client *************************
06:25:22:        Website: https://foldingathome.org/
06:25:22:      Copyright: (c) 2009-2018 foldingathome.org
06:25:22:         Author: Joseph Coffland <joseph@cauldrondevelopment.com>
06:25:22:           Args: --child --lifeline 1181 /etc/fahclient/config.xml --run-as
06:25:22:                 fahclient --pid-file=/var/run/fahclient.pid --daemon
06:25:22:         Config: /etc/fahclient/config.xml
06:25:22:******************************** Build ********************************
06:25:22:        Version: 7.5.1
06:25:22:           Date: May 11 2018
06:25:22:           Time: 19:59:04
06:25:22:     Repository: Git
06:25:22:       Revision: 4705bf53c635f88b8fe85af7675557e15d491ff0
06:25:22:         Branch: master
06:25:22:       Compiler: GNU 6.3.0 20170516
06:25:22:        Options: -std=gnu++98 -O3 -funroll-loops
06:25:22:       Platform: linux2 4.14.0-3-amd64
06:25:22:           Bits: 64
06:25:22:           Mode: Release
06:25:22:******************************* System ********************************
06:25:22:            CPU: Intel(R) Core(TM) i7-4790K CPU @ 4.00GHz
06:25:22:         CPU ID: GenuineIntel Family 6 Model 60 Stepping 3
06:25:22:           CPUs: 8
06:25:22:         Memory: 31.30GiB
06:25:22:    Free Memory: 30.65GiB
06:25:22:        Threads: POSIX_THREADS
06:25:22:     OS Version: 4.15
06:25:22:    Has Battery: false
06:25:22:     On Battery: false
06:25:22:     UTC Offset: -5
06:25:22:            PID: 1183
06:25:22:            CWD: /var/lib/fahclient
06:25:22:             OS: Linux 4.15.0-22-generic x86_64
06:25:22:        OS Arch: AMD64
06:25:22:           GPUs: 1
06:25:22:          GPU 0: Bus:1 Slot:0 Func:0 NVIDIA:7 GP104 [GeForce GTX 1080] 8873
06:25:22:  CUDA Device 0: Platform:0 Device:0 Bus:1 Slot:0 Compute:6.1 Driver:9.1
06:25:22:OpenCL Device 0: Platform:0 Device:0 Bus:1 Slot:0 Compute:1.2 Driver:390.48
06:25:22:***********************************************************************
06:25:22:<config>
06:25:22:  <!-- HTTP Server -->
06:25:22:  <allow v='127.0.0.1 192.168.5.0/24'/>
06:25:22:
06:25:22:  <!-- Network -->
06:25:22:  <proxy v=':8080'/>
06:25:22:
06:25:22:  <!-- Remote Command Server -->
06:25:22:  <command-allow-no-pass v='127.0.0.1 192.168.5.0/24'/>
06:25:22:
06:25:22:  <!-- Slot Control -->
06:25:22:  <pause-on-start v='true'/>
06:25:22:  <power v='full'/>
06:25:22:
06:25:22:  <!-- User Information -->
06:25:22:  <passkey v='********************************'/>
06:25:22:  <team v='50625'/>
06:25:22:  <user v='Amaruk'/>
06:25:22:
06:25:22:  <!-- Work Unit Control -->
06:25:22:  <next-unit-percentage v='100'/>
06:25:22:
06:25:22:  <!-- Folding Slots -->
06:25:22:  <slot id='0' type='CPU'/>
06:25:22:</config>
06:25:22:Switching to user fahclient
06:25:22:Trying to access database...
06:25:22:Successfully acquired database lock
06:25:22:Enabled folding slot 00: PAUSED cpu:8 (by user)
06:25:48:FS00:Unpaused
06:25:48:WU00:FS00:Starting
06:25:48:WU00:FS00:Running FahCore: /usr/bin/FAHCoreWrapper /var/lib/fahclient/cores/cores.foldingathome.org/Linux/AMD64/AVX/Core_a7.fah/FahCore_a7 -dir 00 -suffix 01 -version 705 -lifeline 1183 -checkpoint 15 -np 8
06:25:48:WU00:FS00:Started FahCore on PID 1891
06:25:48:WU00:FS00:Core PID:1895
06:25:48:WU00:FS00:FahCore 0xa7 started
06:25:49:WU00:FS00:0xa7:*********************** Log Started 2018-06-02T06:25:48Z ***********************
06:25:49:WU00:FS00:0xa7:************************** Gromacs Folding@home Core ***************************
06:25:49:WU00:FS00:0xa7:       Type: 0xa7
06:25:49:WU00:FS00:0xa7:       Core: Gromacs
06:25:49:WU00:FS00:0xa7:    Website: https://foldingathome.org/
06:25:49:WU00:FS00:0xa7:  Copyright: (c) 2009-2018 foldingathome.org
06:25:49:WU00:FS00:0xa7:     Author: Joseph Coffland <joseph@cauldrondevelopment.com>
06:25:49:WU00:FS00:0xa7:       Args: -dir 00 -suffix 01 -version 705 -lifeline 1891 -checkpoint 15 -np 8
06:25:49:WU00:FS00:0xa7:     Config: <none>
06:25:49:WU00:FS00:0xa7:************************************ Build *************************************
06:25:49:WU00:FS00:0xa7:    Version: 0.0.17
06:25:49:WU00:FS00:0xa7:       Date: Apr 27 2018
06:25:49:WU00:FS00:0xa7:       Time: 19:09:21
06:25:49:WU00:FS00:0xa7: Repository: Git
06:25:49:WU00:FS00:0xa7:   Revision: 21359963583d09ec2063ef946399441c4df4ccd7
06:25:49:WU00:FS00:0xa7:     Branch: master
06:25:49:WU00:FS00:0xa7:   Compiler: GNU 6.3.0 20170516
06:25:49:WU00:FS00:0xa7:    Options: -std=gnu++98 -O3 -funroll-loops
06:25:49:WU00:FS00:0xa7:   Platform: linux2 4.14.0-3-amd64
06:25:49:WU00:FS00:0xa7:       Bits: 64
06:25:49:WU00:FS00:0xa7:       Mode: Release
06:25:49:WU00:FS00:0xa7:       SIMD: avx_256
06:25:49:WU00:FS00:0xa7:************************************ System ************************************
06:25:49:WU00:FS00:0xa7:        CPU: Intel(R) Core(TM) i7-4790K CPU @ 4.00GHz
06:25:49:WU00:FS00:0xa7:     CPU ID: GenuineIntel Family 6 Model 60 Stepping 3
06:25:49:WU00:FS00:0xa7:       CPUs: 8
06:25:49:WU00:FS00:0xa7:     Memory: 31.30GiB
06:25:49:WU00:FS00:0xa7:Free Memory: 29.68GiB
06:25:49:WU00:FS00:0xa7:    Threads: POSIX_THREADS
06:25:49:WU00:FS00:0xa7: OS Version: 4.15
06:25:49:WU00:FS00:0xa7:Has Battery: false
06:25:49:WU00:FS00:0xa7: On Battery: false
06:25:49:WU00:FS00:0xa7: UTC Offset: -5
06:25:49:WU00:FS00:0xa7:        PID: 1895
06:25:49:WU00:FS00:0xa7:        CWD: /var/lib/fahclient/work
06:25:49:WU00:FS00:0xa7:         OS: Linux 4.15.0-22-generic x86_64
06:25:49:WU00:FS00:0xa7:    OS Arch: AMD64
06:25:49:WU00:FS00:0xa7:********************************************************************************
06:25:49:WU00:FS00:0xa7:Project: 13810 (Run 0, Clone 300, Gen 81)
06:25:49:WU00:FS00:0xa7:Unit: 0x0000005f80fccb025a9197d073136a3a
06:25:49:WU00:FS00:0xa7:Digital signatures verified
06:25:49:WU00:FS00:0xa7:Calling: mdrun -s frame81.tpr -o frame81.trr -x frame81.xtc -cpi state.cpt -cpt 15 -nt 8
06:25:49:WU00:FS00:0xa7:Steps: first=20250000 total=250000
06:25:49:WU00:FS00:0xa7:Completed 10175 out of 250000 steps (4%)
06:26:08:Adding folding slot 01: PAUSED gpu:0:GP104 [GeForce GTX 1080] 8873 (by user)
06:26:08:Saving configuration to /etc/fahclient/config.xml
06:26:08:<config>
06:26:08:  <!-- HTTP Server -->
06:26:08:  <allow v='127.0.0.1 192.168.5.0/24'/>
06:26:08:
06:26:08:  <!-- Network -->
06:26:08:  <proxy v=':8080'/>
06:26:08:
06:26:08:  <!-- Remote Command Server -->
06:26:08:  <command-allow-no-pass v='127.0.0.1 192.168.5.0/24'/>
06:26:08:
06:26:08:  <!-- Slot Control -->
06:26:08:  <pause-on-start v='true'/>
06:26:08:  <power v='full'/>
06:26:08:
06:26:08:  <!-- User Information -->
06:26:08:  <passkey v='********************************'/>
06:26:08:  <team v='50625'/>
06:26:08:  <user v='Amaruk'/>
06:26:08:
06:26:08:  <!-- Work Unit Control -->
06:26:08:  <next-unit-percentage v='100'/>
06:26:08:
06:26:08:  <!-- Folding Slots -->
06:26:08:  <slot id='0' type='CPU'/>
06:26:08:  <slot id='1' type='GPU'/>
06:26:08:</config>
06:26:08:FS00:Shutting core down
06:26:08:WU00:FS00:0xa7:Caught signal SIGINT(2) on PID 1895
06:26:08:WU00:FS00:0xa7:Exiting, please wait. . .
06:26:10:WU00:FS00:FahCore returned: INTERRUPTED (102 = 0x66)
06:26:10:WU00:FS00:Starting
06:26:10:WARNING:WU00:FS00:Changed SMP threads from 8 to 7 this can cause some work units to fail
06:26:10:WU00:FS00:Running FahCore: /usr/bin/FAHCoreWrapper /var/lib/fahclient/cores/cores.foldingathome.org/Linux/AMD64/AVX/Core_a7.fah/FahCore_a7 -dir 00 -suffix 01 -version 705 -lifeline 1183 -checkpoint 15 -np 7
06:26:10:WU00:FS00:Started FahCore on PID 1909
06:26:10:WU00:FS00:Core PID:1913
06:26:10:WU00:FS00:FahCore 0xa7 started
06:26:11:FS01:Unpaused
06:26:11:WU00:FS00:0xa7:*********************** Log Started 2018-06-02T06:26:10Z ***********************
06:26:11:WU00:FS00:0xa7:************************** Gromacs Folding@home Core ***************************
06:26:11:WU00:FS00:0xa7:       Type: 0xa7
06:26:11:WU00:FS00:0xa7:       Core: Gromacs
06:26:11:WU00:FS00:0xa7:    Website: https://foldingathome.org/
06:26:11:WU00:FS00:0xa7:  Copyright: (c) 2009-2018 foldingathome.org
06:26:11:WU00:FS00:0xa7:     Author: Joseph Coffland <joseph@cauldrondevelopment.com>
06:26:11:WU00:FS00:0xa7:       Args: -dir 00 -suffix 01 -version 705 -lifeline 1909 -checkpoint 15 -np 7
06:26:11:WU00:FS00:0xa7:     Config: <none>
06:26:11:WU00:FS00:0xa7:************************************ Build *************************************
06:26:11:WU00:FS00:0xa7:    Version: 0.0.17
06:26:11:WU00:FS00:0xa7:       Date: Apr 27 2018
06:26:11:WU00:FS00:0xa7:       Time: 19:09:21
06:26:11:WU00:FS00:0xa7: Repository: Git
06:26:11:WU00:FS00:0xa7:   Revision: 21359963583d09ec2063ef946399441c4df4ccd7
06:26:11:WU00:FS00:0xa7:     Branch: master
06:26:11:WU00:FS00:0xa7:   Compiler: GNU 6.3.0 20170516
06:26:11:WU00:FS00:0xa7:    Options: -std=gnu++98 -O3 -funroll-loops
06:26:11:WU00:FS00:0xa7:   Platform: linux2 4.14.0-3-amd64
06:26:11:WU00:FS00:0xa7:       Bits: 64
06:26:11:WU00:FS00:0xa7:       Mode: Release
06:26:11:WU00:FS00:0xa7:       SIMD: avx_256
06:26:11:WU00:FS00:0xa7:************************************ System ************************************
06:26:11:WU00:FS00:0xa7:        CPU: Intel(R) Core(TM) i7-4790K CPU @ 4.00GHz
06:26:11:WU00:FS00:0xa7:     CPU ID: GenuineIntel Family 6 Model 60 Stepping 3
06:26:11:WU00:FS00:0xa7:       CPUs: 8
06:26:11:WU00:FS00:0xa7:     Memory: 31.30GiB
06:26:11:WU00:FS00:0xa7:Free Memory: 29.65GiB
06:26:11:WU00:FS00:0xa7:    Threads: POSIX_THREADS
06:26:11:WU00:FS00:0xa7: OS Version: 4.15
06:26:11:WU00:FS00:0xa7:Has Battery: false
06:26:11:WU00:FS00:0xa7: On Battery: false
06:26:11:WU00:FS00:0xa7: UTC Offset: -5
06:26:11:WU00:FS00:0xa7:        PID: 1913
06:26:11:WU00:FS00:0xa7:        CWD: /var/lib/fahclient/work
06:26:11:WU00:FS00:0xa7:         OS: Linux 4.15.0-22-generic x86_64
06:26:11:WU00:FS00:0xa7:    OS Arch: AMD64
06:26:11:WU00:FS00:0xa7:********************************************************************************
06:26:11:WU00:FS00:0xa7:Project: 13810 (Run 0, Clone 300, Gen 81)
06:26:11:WU00:FS00:0xa7:Unit: 0x0000005f80fccb025a9197d073136a3a
06:26:11:WU00:FS00:0xa7:Digital signatures verified
06:26:11:WU00:FS00:0xa7:Reducing thread count from 7 to 6 to avoid domain decomposition by a prime number > 3
06:26:11:WU00:FS00:0xa7:Calling: mdrun -s frame81.tpr -o frame81.trr -x frame81.xtc -cpi state.cpt -cpt 15 -nt 6
06:26:11:WU00:FS00:0xa7:Steps: first=20250000 total=250000
06:26:11:WU01:FS01:Connecting to 65.254.110.245:8080
06:26:12:WU01:FS01:Assigned to work server 140.163.4.231
06:26:12:WU01:FS01:Requesting new work unit for slot 01: READY gpu:0:GP104 [GeForce GTX 1080] 8873 from 140.163.4.231
06:26:12:WU01:FS01:Connecting to 140.163.4.231:8080
06:26:12:WU01:FS01:Downloading 16.53MiB
06:26:12:WU00:FS00:0xa7:Completed 10507 out of 250000 steps (4%)
06:26:18:WU01:FS01:Download 80.56%
06:26:19:WU01:FS01:Download complete
06:26:19:WU01:FS01:Received Unit: id:01 state:DOWNLOAD error:NO_ERROR project:11713 run:27 clone:122 gen:48 core:0x21 unit:0x000000498ca304e75ae6351fd08f54cc
06:26:19:WU01:FS01:Downloading core from http://cores.foldingathome.org/Linux/AMD64/NVIDIA/Fermi/Core_21.fah
06:26:19:WU01:FS01:Connecting to cores.foldingathome.org:80
06:26:19:WU01:FS01:FahCore 21: Downloading 3.23MiB
06:26:20:WU01:FS01:FahCore 21: Download complete
06:26:21:WU01:FS01:Valid core signature
06:26:21:WU01:FS01:Unpacked 7.94MiB to cores/cores.foldingathome.org/Linux/AMD64/NVIDIA/Fermi/Core_21.fah/FahCore_21
06:26:21:WU01:FS01:Starting
06:26:21:WU01:FS01:Running FahCore: /usr/bin/FAHCoreWrapper /var/lib/fahclient/cores/cores.foldingathome.org/Linux/AMD64/NVIDIA/Fermi/Core_21.fah/FahCore_21 -dir 01 -suffix 01 -version 705 -lifeline 1183 -checkpoint 15 -gpu-vendor nvidia -opencl-platform 0 -opencl-device 0 -cuda-device 0 -gpu 0
06:26:21:WU01:FS01:Started FahCore on PID 1927
06:26:21:WU01:FS01:Core PID:1931
06:26:21:WU01:FS01:FahCore 0x21 started
06:26:21:WU01:FS01:0x21:*********************** Log Started 2018-06-02T06:26:21Z ***********************
06:26:21:WU01:FS01:0x21:Project: 11713 (Run 27, Clone 122, Gen 48)
06:26:21:WU01:FS01:0x21:Unit: 0x000000498ca304e75ae6351fd08f54cc
06:26:21:WU01:FS01:0x21:CPU: 0x00000000000000000000000000000000
06:26:21:WU01:FS01:0x21:Machine: 1
06:26:21:WU01:FS01:0x21:Reading tar file core.xml
06:26:21:WU01:FS01:0x21:Reading tar file integrator.xml
06:26:21:WU01:FS01:0x21:Reading tar file state.xml
06:26:21:WU01:FS01:0x21:Reading tar file system.xml
06:26:21:WU01:FS01:0x21:Digital signatures verified
06:26:21:WU01:FS01:0x21:Folding@home GPU Core21 Folding@home Core
06:26:21:WU01:FS01:0x21:Version 0.0.18
06:26:23:Saving configuration to /etc/fahclient/config.xml
06:26:23:<config>
06:26:23:  <!-- HTTP Server -->
06:26:23:  <allow v='127.0.0.1 192.168.5.0/24'/>
06:26:23:
06:26:23:  <!-- Network -->
06:26:23:  <proxy v=':8080'/>
06:26:23:
06:26:23:  <!-- Remote Command Server -->
06:26:23:  <command-allow-no-pass v='127.0.0.1 192.168.5.0/24'/>
06:26:23:
06:26:23:  <!-- Slot Control -->
06:26:23:  <pause-on-start v='true'/>
06:26:23:  <power v='full'/>
06:26:23:
06:26:23:  <!-- User Information -->
06:26:23:  <passkey v='********************************'/>
06:26:23:  <team v='50625'/>
06:26:23:  <user v='Amaruk'/>
06:26:23:
06:26:23:  <!-- Work Unit Control -->
06:26:23:  <next-unit-percentage v='100'/>
06:26:23:
06:26:23:  <!-- Folding Slots -->
06:26:23:  <slot id='0' type='CPU'/>
06:26:23:  <slot id='1' type='GPU'/>
06:26:23:</config>
06:26:28:WU01:FS01:0x21:Completed 0 out of 7500000 steps (0%)
06:26:28:WU01:FS01:0x21:Temperature control disabled. Requirements: single Nvidia GPU, tmax must be < 110 and twait >= 900
06:26:35:FS00:Finishing
06:28:25:WU01:FS01:0x21:Completed 75000 out of 7500000 steps (1%)
06:28:27:WU00:FS00:0xa7:Completed 12500 out of 250000 steps (5%)
06:30:23:WU01:FS01:0x21:Completed 150000 out of 7500000 steps (2%)
06:31:18:WU00:FS00:0xa7:Completed 15000 out of 250000 steps (6%)
06:32:20:WU01:FS01:0x21:Completed 225000 out of 7500000 steps (3%)
06:33:06:WARNING:FS01:Size of positions 2578 does not match topology 2576
06:33:57:WU00:FS00:0xa7:Completed 17500 out of 250000 steps (7%)
06:34:20:WU01:FS01:0x21:Completed 300000 out of 7500000 steps (4%)
06:36:18:WU01:FS01:0x21:Completed 375000 out of 7500000 steps (5%)
06:36:31:WU00:FS00:0xa7:Completed 20000 out of 250000 steps (8%)
06:38:17:WU01:FS01:0x21:Completed 450000 out of 7500000 steps (6%)
06:39:05:WU00:FS00:0xa7:Completed 22500 out of 250000 steps (9%)
06:39:42:WARNING:FS01:Size of positions 2578 does not match topology 2576
06:40:16:WU01:FS01:0x21:Completed 525000 out of 7500000 steps (7%)
06:41:39:WU00:FS00:0xa7:Completed 25000 out of 250000 steps (10%)
06:42:14:WU01:FS01:0x21:Completed 600000 out of 7500000 steps (8%)
06:44:12:WU00:FS00:0xa7:Completed 27500 out of 250000 steps (11%)
06:44:13:WU01:FS01:0x21:Completed 675000 out of 7500000 steps (9%)
06:46:11:WU01:FS01:0x21:Completed 750000 out of 7500000 steps (10%)
06:46:17:WARNING:FS01:Size of positions 2578 does not match topology 2576
06:46:45:WU00:FS00:0xa7:Completed 30000 out of 250000 steps (12%)
06:48:11:WU01:FS01:0x21:Completed 825000 out of 7500000 steps (11%)
06:49:19:WU00:FS00:0xa7:Completed 32500 out of 250000 steps (13%)
06:50:09:WU01:FS01:0x21:Completed 900000 out of 7500000 steps (12%)
06:51:52:WU00:FS00:0xa7:Completed 35000 out of 250000 steps (14%)
06:52:07:WU01:FS01:0x21:Completed 975000 out of 7500000 steps (13%)
06:52:53:WARNING:FS01:Size of positions 2578 does not match topology 2576
06:54:07:WU01:FS01:0x21:Completed 1050000 out of 7500000 steps (14%)
06:54:24:WU00:FS00:0xa7:Completed 37500 out of 250000 steps (15%)
06:56:05:WU01:FS01:0x21:Completed 1125000 out of 7500000 steps (15%)
06:56:57:WU00:FS00:0xa7:Completed 40000 out of 250000 steps (16%)
06:58:03:WU01:FS01:0x21:Completed 1200000 out of 7500000 steps (16%)
06:59:28:WARNING:FS01:Size of positions 2578 does not match topology 2576


Also, this error only appears in the logs of my V7.5.1 clients.

Although that may be due to the V7.4.4 client running the 367.57 driver.
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Re: Core 21.0.0.18 update

Postby foldy » Sun Jun 03, 2018 7:26 am

I guess the warning message will only be fixed with a new FahCore_22 which uses the latest OpenMM.
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Posts: 1130
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