Code: Select all
[04:39:18] Working on Unit 05 [July 25 04:39:18]
[04:39:18] + Working ...
[04:39:18] - Calling 'mpiexec -channel auto -np 4 FahCore_a1.exe -dir work/ -suffix 05 -checkpoint 15 -forceasm -verbose -lifeline 4088 -version 591'
[04:39:18]
[04:39:18] *------------------------------*
[04:39:18] Folding@Home Gromacs SMP Core
[04:39:18] Version 1.74 (March 10, 2007)
[04:39:18]
[04:39:18] Preparing to commence simulation
[04:39:18] - Ensuring status. Please wait.
[04:39:35] - Assembly optimizations manually forced on.
[04:39:35] - Not checking prior termination.
[04:39:49] - Expanded 4828905 -> 24810145 (decompressed 513.7 percent)
[04:39:49] - Starting from initial work packet
[04:39:49]
[04:39:49] Project: 2665 (Run 2, Clone 791, Gen 29)
[04:39:49]
[04:40:16] Assembly optimizations on if available.
[04:40:16] Entering M.D.
[04:40:22] Rejecting checkpoint
[04:40:23] Protein: HGG with glycosylations
[04:40:23] Writing local files
[04:40:32] Extra SSE boost OK.
[04:40:33] Writing local files
[04:40:33] Completed 0 out of 250000 steps (0 percent)
[04:55:35] Timered checkpoint triggered.
[04:57:11] Writing local files
[04:57:11] Completed 2500 out of 250000 steps (1 percent)
[05:12:12] Timered checkpoint triggered.
[05:13:48] Writing local files
[05:13:49] Completed 5000 out of 250000 steps (2 percent)
[05:28:49] Timered checkpoint triggered.
[05:30:32] Writing local files
[05:30:32] Completed 7500 out of 250000 steps (3 percent)
[05:39:31] - Autosending finished units...
[05:39:31] Trying to send all finished work units
[05:39:31] + No unsent completed units remaining.
[05:39:31] - Autosend completed
[05:45:33] Timered checkpoint triggered.
[05:47:08] Writing local files
[05:47:08] Completed 10000 out of 250000 steps (4 percent)
[06:02:09] Timered checkpoint triggered.
[06:03:44] Writing local files
[06:03:45] Completed 12500 out of 250000 steps (5 percent)
[06:18:45] Timered checkpoint triggered.
[06:20:23] Writing local files
[06:20:23] Completed 15000 out of 250000 steps (6 percent)
[06:35:24] Timered checkpoint triggered.
[06:37:54] Writing local files
[06:37:54] Completed 17500 out of 250000 steps (7 percent)
[06:52:55] Timered checkpoint triggered.
[06:54:35] Writing local files
[06:54:35] Completed 20000 out of 250000 steps (8 percent)
[07:09:36] Timered checkpoint triggered.
[07:11:12] Writing local files
[07:11:12] Completed 22500 out of 250000 steps (9 percent)
[07:26:13] Timered checkpoint triggered.
[07:27:51] Writing local files
[07:27:51] Completed 25000 out of 250000 steps (10 percent)
[07:42:52] Timered checkpoint triggered.
[07:44:29] Writing local files
[07:44:30] Completed 27500 out of 250000 steps (11 percent)
[07:59:30] Timered checkpoint triggered.
[08:01:10] Writing local files
[08:01:10] Completed 30000 out of 250000 steps (12 percent)
[08:09:00] Warning: long 1-4 interactions
[08:09:01] Gromacs cannot continue further.
[08:09:01] Going to send back what have done.
[08:09:01] logfile size: 31629
[08:09:01] - Writing 32165 bytes of core data to disk...
[08:09:01] ... Done.
[08:09:01] - Failed to delete work/wudata_05.sas
[08:09:01] - Failed to delete work/wudata_05.goe
[08:09:01] Warning: check for stray files
[08:09:01]
[08:09:01] Folding@home Core Shutdown: EARLY_UNIT_END
[08:09:01]
[08:09:01] Folding@home Core Shutdown: EARLY_UNIT_END
[08:09:06] CoreStatus = 7B (123)
[08:09:06] Client-core communications error: ERROR 0x7b
[08:09:06] Deleting current work unit & continuing...
[08:11:26] - Warning: Could not delete all work unit files (5): Core returned invalid code
[08:11:26] Trying to send all finished work units
[08:11:26] + No unsent completed units remaining.
[08:11:26] - Preparing to get new work unit...
[08:11:26] + Attempting to get work packet
[08:11:26] - Will indicate memory of 2047 MB
[08:11:26] - Connecting to assignment server
[08:11:26] Connecting to http://assign.stanford.edu:8080/
[08:11:26] Posted data.
[08:11:26] Initial: 40AB; - Successful: assigned to (171.64.65.64).
[08:11:26] + News From Folding@Home: Welcome to Folding@Home
[08:11:26] Loaded queue successfully.
[08:11:26] Connecting to http://171.64.65.64:8080/
[08:11:32] Posted data.
[08:11:32] Initial: 0000; - Receiving payload (expected size: 4829417)
[08:11:39] - Downloaded at ~673 kB/s
[08:11:39] - Averaged speed for that direction ~620 kB/s
[08:11:39] + Received work.
[08:11:41] + Closed connections
[08:11:46]
[08:11:46] + Processing work unit
[08:11:46] Core required: FahCore_a1.exe
[08:11:46] Core found.
[08:11:46] Working on Unit 06 [July 25 08:11:46]
[08:11:46] + Working ...
[08:11:46] - Calling 'mpiexec -channel auto -np 4 FahCore_a1.exe -dir work/ -suffix 06 -checkpoint 15 -forceasm -verbose -lifeline 4088 -version 591'
[08:11:46]
[08:11:46] *------------------------------*
[08:11:46] Folding@Home Gromacs SMP Core
[08:11:46] Version 1.74 (March 10, 2007)
[08:11:46]
[08:11:46] Preparing to commence simulation
[08:11:46] - Ensuring status. Please wait.
[08:12:03] - Assembly optimizations manually forced on.
[08:12:03] - Not checking prior termination.
[08:12:17] - Expanded 4828905 -> 24810145 (decompressed 513.7 percent)
[08:12:17] - Starting from initial work packet
[08:12:17]
[08:12:17] Project: 2665 (Run 2, Clone 791, Gen 29)
[08:12:17]
[08:12:45] Assembly optimizations on if available.
[08:12:45] Entering M.D.
[08:12:51] Rejecting checkpoint
[08:12:53] Protein: HGG with glycosylations
[08:12:53] Writing local files
[08:13:02] Extra SSE boost OK.
[08:13:02] Writing local files
[08:13:03] Completed 0 out of 250000 steps (0 percent)
[08:28:03] Timered checkpoint triggered.
[08:29:47] Writing local files
[08:29:47] Completed 2500 out of 250000 steps (1 percent)
[08:44:47] Timered checkpoint triggered.
[08:46:33] Writing local files
[08:46:33] Completed 5000 out of 250000 steps (2 percent)
[09:01:34] Timered checkpoint triggered.
[09:03:15] Writing local files
[09:03:15] Completed 7500 out of 250000 steps (3 percent)
[09:18:16] Timered checkpoint triggered.
[09:19:55] Writing local files
[09:19:55] Completed 10000 out of 250000 steps (4 percent)
[09:34:56] Timered checkpoint triggered.
[09:36:36] Writing local files
[09:36:37] Completed 12500 out of 250000 steps (5 percent)
[09:51:37] Timered checkpoint triggered.
[09:53:19] Writing local files
[09:53:19] Completed 15000 out of 250000 steps (6 percent)
[10:08:20] Timered checkpoint triggered.
[10:10:04] Writing local files
[10:10:04] Completed 17500 out of 250000 steps (7 percent)
[10:25:05] Timered checkpoint triggered.
[10:26:48] Writing local files
[10:26:48] Completed 20000 out of 250000 steps (8 percent)
[10:41:49] Timered checkpoint triggered.
[10:43:31] Writing local files
[10:43:31] Completed 22500 out of 250000 steps (9 percent)
[10:58:32] Timered checkpoint triggered.
[11:00:15] Writing local files
[11:00:16] Completed 25000 out of 250000 steps (10 percent)
[11:15:16] Timered checkpoint triggered.
[11:16:57] Writing local files
[11:16:57] Completed 27500 out of 250000 steps (11 percent)
[11:31:58] Timered checkpoint triggered.
[11:33:39] Writing local files
[11:33:39] Completed 30000 out of 250000 steps (12 percent)
[11:39:31] - Autosending finished units...
[11:39:31] Trying to send all finished work units
[11:39:31] + No unsent completed units remaining.
[11:39:31] - Autosend completed
[11:41:30] Warning: long 1-4 interactions
[11:41:30] Gromacs cannot continue further.
[11:41:30] Going to send back what have done.
[11:41:30] logfile size: 31629
[11:41:30] - Writing 32165 bytes of core data to disk...
[11:41:30] ... Done.
[11:41:30] - Failed to delete work/wudata_06.sas
[11:41:30] - Failed to delete work/wudata_06.goe
[11:41:30] Warning: check for stray files
[11:41:30]
[11:41:30] Folding@home Core Shutdown: EARLY_UNIT_END
[11:41:30]
[11:41:30] Folding@home Core Shutdown: EARLY_UNIT_END
[11:41:36] CoreStatus = 7B (123)
[11:41:36] Client-core communications error: ERROR 0x7b
[11:41:36] Deleting current work unit & continuing...
[11:43:56] - Warning: Could not delete all work unit files (6): Core returned invalid code
[11:43:56] Trying to send all finished work units
[11:43:56] + No unsent completed units remaining.
[11:43:56] - Preparing to get new work unit...
[11:43:56] + Attempting to get work packet
[11:43:56] - Will indicate memory of 2047 MB
[11:43:56] - Connecting to assignment server
[11:43:56] Connecting to http://assign.stanford.edu:8080/
[11:43:57] Posted data.
[11:43:57] Initial: 40AB; - Successful: assigned to (171.64.65.64).
[11:43:57] + News From Folding@Home: Welcome to Folding@Home
[11:43:57] Loaded queue successfully.
[11:43:57] Connecting to http://171.64.65.64:8080/
[11:44:02] Posted data.
[11:44:02] Initial: 0000; - Receiving payload (expected size: 4829417)
[11:44:09] - Downloaded at ~673 kB/s
[11:44:09] - Averaged speed for that direction ~631 kB/s
[11:44:09] + Received work.
[11:44:11] + Closed connections
[11:44:16]
[11:44:16] + Processing work unit
[11:44:16] Core required: FahCore_a1.exe
[11:44:16] Core found.
[11:44:16] Working on Unit 07 [July 25 11:44:16]
[11:44:16] + Working ...
[11:44:16] - Calling 'mpiexec -channel auto -np 4 FahCore_a1.exe -dir work/ -suffix 07 -checkpoint 15 -forceasm -verbose -lifeline 4088 -version 591'
[11:44:16]
[11:44:16] *------------------------------*
[11:44:16] Folding@Home Gromacs SMP Core
[11:44:16] Version 1.74 (March 10, 2007)
[11:44:16]
[11:44:16] Preparing to commence simulation
[11:44:16] - Ensuring status. Please wait.
[11:44:33] - Assembly optimizations manually forced on.
[11:44:33] - Not checking prior termination.
[11:44:47] - Expanded 4828905 -> 24810145 (decompressed 513.7 percent)
[11:44:47] - Starting from initial work packet
[11:44:47]
[11:44:47] Project: 2665 (Run 2, Clone 791, Gen 29)
[11:44:47]
[11:45:14] Assembly optimizations on if available.
[11:45:14] Entering M.D.
[11:45:20] Rejecting checkpoint
[11:45:22] Protein: HGG with glycosylations
[11:45:22] Writing local files
[11:45:31] Extra SSE boost OK.
[11:45:32] Writing local files
[11:45:32] Completed 0 out of 250000 steps (0 percent)
[12:00:33] Timered checkpoint triggered.
[12:02:14] Writing local files
[12:02:14] Completed 2500 out of 250000 steps (1 percent)
[12:17:14] Timered checkpoint triggered.
[12:19:13] Writing local files
[12:19:14] Completed 5000 out of 250000 steps (2 percent)
[12:34:14] Timered checkpoint triggered.
[12:36:02] Writing local files
[12:36:02] Completed 7500 out of 250000 steps (3 percent)
[12:51:03] Timered checkpoint triggered.
[12:52:50] Writing local files
[12:52:50] Completed 10000 out of 250000 steps (4 percent)
[13:07:50] Timered checkpoint triggered.
[13:09:34] Writing local files
[13:09:35] Completed 12500 out of 250000 steps (5 percent)
[13:24:35] Timered checkpoint triggered.
[13:26:23] Writing local files
[13:26:23] Completed 15000 out of 250000 steps (6 percent)
[13:41:23] Timered checkpoint triggered.
[13:43:08] Writing local files
[13:43:08] Completed 17500 out of 250000 steps (7 percent)
[13:44:41] Killing all core threads
[13:44:41] Killing SMP core threads
[13:44:41] Killing 4 cores
[13:44:41] Killing core 0
[13:44:41] Killing core 1
[13:44:41] Killing core 2
[13:44:41] Killing core 3
Folding@Home Client Shutdown at user request.
[13:44:41] ***** Got a SIGTERM signal (2)
[13:44:41] Killing all core threads
[13:44:41] Killing SMP core threads
[13:44:41] Killing 4 cores
[13:44:41] Killing core 0
[13:44:41] Killing core 1
[13:44:41] Killing core 2
[13:44:41] Killing core 3
Folding@Home Client Shutdown.